Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9400713..9404382-chr11:9404774..9408112,4	MCF-7	breast:
2	chr11:9400809..9404284-chr11:9404450..9406324,3	K562	blood:

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10437595	0.82[ASN][1000 genomes]
rs10437665	0.86[ASN][1000 genomes]
rs10770024	0.98[ASN][1000 genomes]
rs10840218	0.82[ASN][1000 genomes]
rs10840219	0.86[ASN][1000 genomes]
rs10840222	0.96[ASN][1000 genomes]
rs10840224	0.96[ASN][1000 genomes]
rs35484677	0.81[ASN][1000 genomes]
rs4362147	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4409822	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4471419	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4525241	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4575271	0.89[ASN][1000 genomes]
rs4582976	0.99[ASN][1000 genomes]
rs4625466	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4910048	0.86[ASN][1000 genomes]
rs4910049	0.81[ASN][1000 genomes]
rs4910459	0.84[ASN][1000 genomes]
rs4910460	0.84[ASN][1000 genomes]
rs4910461	0.83[ASN][1000 genomes]
rs7103038	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7105373	0.83[ASN][1000 genomes]
rs7115821	0.83[ASN][1000 genomes]
rs7394742	0.81[ASN][1000 genomes]
rs7395630	0.81[ASN][1000 genomes]
rs7930205	0.98[ASN][1000 genomes]
rs7944535	0.84[ASN][1000 genomes]
rs7946263	0.86[ASN][1000 genomes]
rs7949053	0.84[ASN][1000 genomes]
rs7952145	0.81[ASN][1000 genomes]
rs9971433	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9386800-9406000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:9394800-9402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:9398200-9405800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:9398600-9402400	Weak transcription	NHEK	skin
5	chr11:9398600-9405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:9398800-9402400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:9399000-9405800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:9400400-9401200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:9400600-9401000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr11:9400600-9401200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:9400600-9401200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:9400600-9401400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:9400800-9401000	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:9400800-9401000	Active TSS	HepG2	liver
15	chr11:9400800-9402200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:9400800-9406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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