Variant report

Variant	rs7952145
Chromosome Location	chr11:9380785-9380786
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10437595	0.94[ASN][1000 genomes]
rs10437665	0.95[ASN][1000 genomes]
rs10770024	0.83[ASN][1000 genomes]
rs10840218	0.99[ASN][1000 genomes]
rs10840219	0.95[ASN][1000 genomes]
rs10840222	0.83[ASN][1000 genomes]
rs10840224	0.83[ASN][1000 genomes]
rs11042311	0.93[ASN][1000 genomes]
rs11603265	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12291369	0.91[ASN][1000 genomes]
rs12795379	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35484677	0.93[ASN][1000 genomes]
rs4243948	0.81[ASN][1000 genomes]
rs4362147	0.82[ASN][1000 genomes]
rs4471419	0.82[ASN][1000 genomes]
rs4582976	0.82[ASN][1000 genomes]
rs4625466	0.83[ASN][1000 genomes]
rs4910046	0.93[ASN][1000 genomes]
rs4910047	0.93[ASN][1000 genomes]
rs4910048	0.95[ASN][1000 genomes]
rs4910049	0.93[ASN][1000 genomes]
rs4910458	0.85[ASN][1000 genomes]
rs4910459	0.98[ASN][1000 genomes]
rs4910460	0.98[ASN][1000 genomes]
rs4910461	0.97[ASN][1000 genomes]
rs6486290	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7105373	0.97[ASN][1000 genomes]
rs7115821	0.95[ASN][1000 genomes]
rs7394742	0.95[ASN][1000 genomes]
rs7395630	0.95[ASN][1000 genomes]
rs7930205	0.83[ASN][1000 genomes]
rs7944535	0.98[ASN][1000 genomes]
rs7946263	0.95[ASN][1000 genomes]
rs7949053	0.98[ASN][1000 genomes]
rs9971433	0.97[ASN][1000 genomes]
rs9971484	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7952145	IPO7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9369600-9384000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:9373400-9383800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:9377200-9383000	Weak transcription	A549	lung
4	chr11:9379000-9381600	Weak transcription	Placenta	Placenta
5	chr11:9379000-9383000	Weak transcription	HMEC	breast
6	chr11:9379200-9383000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:9379800-9383000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:9380000-9382800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:9380000-9383000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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