Variant report

Variant	rs4362147
Chromosome Location	chr11:9397516-9397517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9387928..9389477-chr11:9396814..9399439,3	K562	blood:
2	chr11:9395810..9400797-chr11:9402535..9410441,9	K562	blood:
3	chr11:9397514..9400797-chr11:9405124..9408985,5	K562	blood:

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10437595	0.83[ASN][1000 genomes]
rs10437665	0.87[ASN][1000 genomes]
rs10770024	0.98[ASN][1000 genomes]
rs10840218	0.83[ASN][1000 genomes]
rs10840219	0.87[ASN][1000 genomes]
rs10840222	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10840224	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35484677	0.82[ASN][1000 genomes]
rs4243948	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4409822	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4471419	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525241	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4575271	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4582976	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4625466	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4910048	0.87[ASN][1000 genomes]
rs4910049	0.81[ASN][1000 genomes]
rs4910459	0.84[ASN][1000 genomes]
rs4910460	0.84[ASN][1000 genomes]
rs4910461	0.84[ASN][1000 genomes]
rs7103038	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7105373	0.84[ASN][1000 genomes]
rs7115821	0.84[ASN][1000 genomes]
rs7394742	0.82[ASN][1000 genomes]
rs7395630	0.82[ASN][1000 genomes]
rs7930205	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7944535	0.84[ASN][1000 genomes]
rs7946263	0.87[ASN][1000 genomes]
rs7949053	0.84[ASN][1000 genomes]
rs7952145	0.82[ASN][1000 genomes]
rs9971433	0.84[ASN][1000 genomes]
rs9971484	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9386800-9406000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:9394800-9400600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:9394800-9400600	Weak transcription	HepG2	liver
4	chr11:9394800-9402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:9395000-9400600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:9395000-9400600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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