Variant report

Variant	rs7103038
Chromosome Location	chr11:9401963-9401964
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10770024	0.87[ASN][1000 genomes]
rs10840222	0.85[ASN][1000 genomes]
rs10840224	0.85[ASN][1000 genomes]
rs4243948	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4362147	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4409822	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4471419	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4525241	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4582976	0.88[ASN][1000 genomes]
rs4625466	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6486307	0.81[ASN][1000 genomes]
rs7930205	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9386800-9406000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:9394800-9402000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:9398200-9405800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:9398600-9402400	Weak transcription	NHEK	skin
5	chr11:9398600-9405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:9398800-9402400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:9399000-9405800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:9400800-9402200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:9400800-9406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:9401200-9402200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:9401200-9402200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:9401200-9402200	Enhancers	HepG2	liver
13	chr11:9401200-9405800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:9401200-9406000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:9401800-9402200	Enhancers	Left Ventricle	heart
16	chr11:9401800-9402800	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links