Variant report

Variant	rs11603265
Chromosome Location	chr11:9385382-9385383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9334051..9337836-chr11:9384228..9387561,5	MCF-7	breast:
2	chr11:9285276..9286981-chr11:9384842..9387352,3	MCF-7	breast:
3	chr11:9383299..9385895-chr11:9587946..9590537,2	MCF-7	breast:
4	chr11:9384653..9387328-chr11:9479697..9482338,3	MCF-7	breast:
5	chr11:9384097..9385753-chr12:124509844..124511367,2	MCF-7	breast:
6	chr11:9381559..9387995-chr11:9480641..9484889,12	K562	blood:
7	chr11:9384832..9388447-chr11:9401739..9404383,5	MCF-7	breast:
8	chr11:9383572..9387718-chr11:9404633..9407849,8	MCF-7	breast:
9	chr11:9384745..9387627-chr11:9387975..9389794,3	K562	blood:
10	chr11:9331410..9339611-chr11:9380876..9388176,24	K562	blood:
11	chr11:9382569..9389533-chr11:9404674..9410600,16	MCF-7	breast:
12	chr11:9384238..9386288-chr11:9482969..9485060,2	MCF-7	breast:
13	chr11:9383348..9385949-chr11:9390931..9392449,2	MCF-7	breast:
14	chr11:9301124..9302676-chr11:9383482..9385931,2	K562	blood:
15	chr11:9384588..9386310-chr13:24153918..24155432,2	K562	blood:
16	chr11:9285562..9287153-chr11:9383259..9386336,3	K562	blood:
17	chr11:9276841..9278348-chr11:9384168..9386134,2	K562	blood:
18	chr11:9385285..9386284-chr2:85581210..85581745,2	Hela-S3	cervix:
19	chr11:9367453..9371339-chr11:9383916..9387622,3	K562	blood:
20	chr11:9381627..9391078-chr11:9403280..9408916,26	K562	blood:
21	chr11:9284716..9287065-chr11:9383893..9385739,2	K562	blood:
22	chr11:9381818..9384534-chr11:9384807..9386539,2	MCF-7	breast:
23	chr11:8729818..8732342-chr11:9384547..9387527,2	MCF-7	breast:
24	chr11:9368736..9371339-chr11:9384685..9387958,4	K562	blood:
25	chr11:9384438..9386089-chr11:9633922..9636673,2	MCF-7	breast:
26	chr11:9331719..9338309-chr11:9381508..9387747,16	K562	blood:
27	chr11:9384654..9388171-chr11:9393379..9396078,3	MCF-7	breast:
28	chr11:9381937..9391078-chr11:9402547..9409222,25	K562	blood:
29	chr11:9384002..9387558-chr11:9481143..9484126,7	K562	blood:
30	chr11:9335001..9337527-chr11:9383012..9386033,4	MCF-7	breast:
31	chr11:9130567..9133268-chr11:9383092..9385997,2	MCF-7	breast:
32	chr11:9339910..9342250-chr11:9383907..9387311,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166471	Chromatin interaction
ENSG00000254884	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000205339	Chromatin interaction
ENSG00000042445	Chromatin interaction
ENSG00000115459	Chromatin interaction
ENSG00000184014	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10437596	1.00[ASN][1000 genomes]
rs10840220	1.00[ASN][1000 genomes]
rs11042321	0.82[ASN][1000 genomes]
rs12795346	0.85[ASN][1000 genomes]
rs12795379	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1578971	0.84[AMR][1000 genomes]
rs4910050	1.00[ASN][1000 genomes]
rs6486290	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952145	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11603265	IPO7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9381000-9385400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:9381600-9385400	Enhancers	Placenta	Placenta
3	chr11:9382800-9385600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:9382800-9385600	Enhancers	NHEK	skin
5	chr11:9383000-9385400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:9383000-9385400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:9383000-9385400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:9383000-9385400	Enhancers	A549	lung
9	chr11:9383000-9385400	Enhancers	Hela-S3	cervix
10	chr11:9383000-9385400	Enhancers	NHDF-Ad	bronchial
11	chr11:9383000-9385600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:9383000-9385600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:9383000-9385600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:9383000-9385600	Enhancers	HSMM	muscle
15	chr11:9383000-9385600	Enhancers	Osteobl	bone
16	chr11:9383000-9386000	Enhancers	HMEC	breast
17	chr11:9383000-9386200	Enhancers	HUVEC	blood vessel
18	chr11:9383000-9386400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:9383200-9385400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr11:9383200-9385400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:9383200-9385600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:9383200-9385600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:9383200-9386200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:9383200-9386600	Enhancers	Fetal Heart	heart
25	chr11:9383400-9385400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:9383800-9385400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr11:9383800-9385400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr11:9383800-9385400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:9383800-9385400	Enhancers	Fetal Intestine Large	intestine
30	chr11:9383800-9385600	Enhancers	H9 Cell Line	embryonic stem cell
31	chr11:9383800-9385600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr11:9383800-9385600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:9383800-9385800	Flanking Active TSS	K562	blood
34	chr11:9383800-9386200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:9383800-9386200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:9384000-9385400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr11:9384000-9385400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:9384000-9385400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr11:9384000-9385400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:9384000-9385400	Enhancers	Colon Smooth Muscle	Colon
41	chr11:9384000-9385400	Enhancers	Fetal Intestine Small	intestine
42	chr11:9384000-9385400	Weak transcription	GM12878-XiMat	blood
43	chr11:9384000-9385600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:9384000-9385600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:9384000-9385600	Weak transcription	Esophagus	oesophagus
46	chr11:9384000-9385800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:9384000-9386200	Enhancers	NH-A	brain
48	chr11:9384200-9385400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr11:9384200-9385400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:9384200-9385400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links