Variant report

Variant	rs10840395
Chromosome Location	chr11:10387833-10387834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10386948..10389618-chr11:10548931..10550631,2	K562	blood:
2	chr11:9779526..9781252-chr11:10386817..10389355,2	K562	blood:
3	chr11:10326162..10327746-chr11:10386723..10389027,2	MCF-7	breast:
4	chr11:10326248..10329160-chr11:10385619..10388445,3	MCF-7	breast:
5	chr11:10227014..10228870-chr11:10386230..10387904,2	K562	blood:
6	chr11:10327968..10329766-chr11:10387274..10390130,2	K562	blood:

Variant related genes	Relation type
ENSG00000245522	Chromatin interaction
ENSG00000246273	Chromatin interaction
ENSG00000148926	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10840392	0.82[CEU][hapmap]
rs2860284	0.83[EUR][1000 genomes]
rs2896536	0.88[CEU][hapmap]
rs2923083	1.00[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2957705	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2957711	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10373600-10388000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10376400-10388000	Weak transcription	Psoas Muscle	Psoas
3	chr11:10380600-10388000	Weak transcription	Lung	lung
4	chr11:10381000-10388000	Weak transcription	Ovary	ovary
5	chr11:10381000-10388200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10384600-10388000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10386800-10388000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:10386800-10388000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:10386800-10388000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:10386800-10388000	Weak transcription	Pancreas	Pancrea
11	chr11:10387000-10388000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:10387000-10388000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:10387000-10388000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:10387200-10388000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:10387200-10388200	Weak transcription	Small Intestine	intestine
16	chr11:10387200-10388600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:10387200-10388600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:10387400-10388000	Enhancers	A549	lung
19	chr11:10387400-10390000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10387600-10388200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:10387600-10388400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:10387600-10388400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr11:10387600-10388600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr11:10387600-10388600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr11:10387600-10388600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:10387600-10388600	Enhancers	NHEK	skin
27	chr11:10387800-10388000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:10387800-10388000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:10387800-10388000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:10387800-10388000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:10387800-10388000	Enhancers	Liver	Liver
32	chr11:10387800-10388000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:10387800-10388000	Enhancers	HepG2	liver
34	chr11:10387800-10388200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:10387800-10388200	Enhancers	Primary hematopoietic stem cells	blood
36	chr11:10387800-10388400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:10387800-10388400	Enhancers	Fetal Heart	heart
38	chr11:10387800-10388400	Enhancers	HMEC	breast
39	chr11:10387800-10388400	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr11:10387800-10388600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr11:10387800-10388600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:10387800-10388600	Enhancers	Adipose Nuclei	Adipose
43	chr11:10387800-10388600	Enhancers	Fetal Stomach	stomach
44	chr11:10387800-10388600	Enhancers	HUVEC	blood vessel
45	chr11:10387800-10388800	Enhancers	Fetal Intestine Small	intestine
46	chr11:10387800-10388800	Enhancers	Fetal Lung	lung
47	chr11:10387800-10388800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr11:10387800-10388800	Enhancers	HSMMtube	muscle
49	chr11:10387800-10389000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:10387800-10389000	Enhancers	Muscle Satellite Cultured Cells	--

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