Variant report

Variant	rs2923083
Chromosome Location	chr11:10387683-10387684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10386948..10389618-chr11:10548931..10550631,2	K562	blood:
2	chr11:9779526..9781252-chr11:10386817..10389355,2	K562	blood:
3	chr11:10326162..10327746-chr11:10386723..10389027,2	MCF-7	breast:
4	chr11:10326248..10329160-chr11:10385619..10388445,3	MCF-7	breast:
5	chr11:10227014..10228870-chr11:10386230..10387904,2	K562	blood:
6	chr11:10327968..10329766-chr11:10387274..10390130,2	K562	blood:

Variant related genes	Relation type
ENSG00000148926	Chromatin interaction
ENSG00000246273	Chromatin interaction
ENSG00000245522	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10840392	0.82[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10840395	1.00[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2860284	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2896536	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2923105	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957704	0.89[ASN][1000 genomes]
rs2957705	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2957719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10373600-10388000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10376400-10388000	Weak transcription	Psoas Muscle	Psoas
3	chr11:10380600-10388000	Weak transcription	Lung	lung
4	chr11:10381000-10388000	Weak transcription	Ovary	ovary
5	chr11:10381000-10388200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:10381200-10387800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:10384600-10388000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:10386800-10387800	Weak transcription	HUVEC	blood vessel
9	chr11:10386800-10388000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:10386800-10388000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:10386800-10388000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:10386800-10388000	Weak transcription	Pancreas	Pancrea
13	chr11:10387000-10388000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:10387000-10388000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:10387000-10388000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr11:10387200-10388000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:10387200-10388200	Weak transcription	Small Intestine	intestine
18	chr11:10387200-10388600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:10387200-10388600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:10387400-10387800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:10387400-10387800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:10387400-10388000	Enhancers	A549	lung
23	chr11:10387400-10390000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:10387600-10388200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr11:10387600-10388400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:10387600-10388400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr11:10387600-10388600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr11:10387600-10388600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr11:10387600-10388600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:10387600-10388600	Enhancers	NHEK	skin

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