Variant report

Variant	rs2957704
Chromosome Location	chr11:10375730-10375731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10840392	0.93[ASN][1000 genomes]
rs2860284	0.92[ASN][1000 genomes]
rs2896536	0.93[ASN][1000 genomes]
rs2923083	0.89[ASN][1000 genomes]
rs2923105	0.96[ASN][1000 genomes]
rs2957705	0.99[ASN][1000 genomes]
rs2957710	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2957719	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10369800-10378000	Enhancers	Placenta	Placenta
2	chr11:10371200-10376200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:10373400-10376000	Weak transcription	Fetal Kidney	kidney
4	chr11:10373600-10375800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:10373600-10376200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:10373600-10376400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:10373600-10376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:10373600-10376600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:10373600-10376600	Weak transcription	HMEC	breast
10	chr11:10373600-10388000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:10373800-10377400	Enhancers	Adipose Nuclei	Adipose
12	chr11:10374000-10375800	Weak transcription	Ovary	ovary
13	chr11:10374000-10376400	Weak transcription	NHEK	skin
14	chr11:10374000-10376600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:10374000-10377400	Weak transcription	NHDF-Ad	bronchial
16	chr11:10374200-10375800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:10374200-10375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:10374200-10376000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:10374200-10376000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:10374200-10376000	Weak transcription	Hela-S3	cervix
21	chr11:10374200-10376000	Weak transcription	NHLF	lung
22	chr11:10374200-10376200	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:10374200-10376200	Weak transcription	Right Atrium	heart
24	chr11:10374200-10376600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:10374200-10386400	Weak transcription	Small Intestine	intestine
26	chr11:10374400-10376000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:10374600-10376200	Weak transcription	HSMMtube	muscle
28	chr11:10374800-10375800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:10374800-10376200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:10374800-10376400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:10374800-10376800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:10375400-10376200	Enhancers	Lung	lung
33	chr11:10375400-10376400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:10375400-10376400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:10375400-10376400	Enhancers	Psoas Muscle	Psoas
36	chr11:10375400-10376600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr11:10375600-10375800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr11:10375600-10376200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:10375600-10376400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:10375600-10378200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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