Variant report

Variant	rs2896536
Chromosome Location	chr11:10374576-10374577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:10374483-10374698	GM12891	blood:	n/a	n/a
2	CEBPB	chr11:10373127-10374602	H1-hESC	embryonic stem cell:	n/a	n/a
3	ZNF384	chr11:10374546-10374746	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10373487..10375727-chr11:10382487..10384337,2	K562	blood:

Variant related genes	Relation type
AMPD3	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10840392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840395	0.88[CEU][hapmap]
rs2860284	0.85[ASN][1000 genomes]
rs2923083	0.89[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2923105	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957704	0.93[ASN][1000 genomes]
rs2957705	0.88[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2957710	0.88[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2957719	0.88[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10369800-10378000	Enhancers	Placenta	Placenta
2	chr11:10371200-10376200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:10372000-10374800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:10372000-10374800	Enhancers	HUVEC	blood vessel
5	chr11:10372400-10375400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:10372800-10374600	Enhancers	Fetal Heart	heart
7	chr11:10372800-10374600	Enhancers	Left Ventricle	heart
8	chr11:10372800-10374800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:10373000-10374600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:10373200-10374600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:10373400-10374600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:10373400-10375400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:10373400-10376000	Weak transcription	Fetal Kidney	kidney
14	chr11:10373600-10375600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:10373600-10375600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:10373600-10375800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:10373600-10376200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10373600-10376400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:10373600-10376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:10373600-10376600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:10373600-10376600	Weak transcription	HMEC	breast
22	chr11:10373600-10388000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:10373800-10374600	Enhancers	HSMMtube	muscle
24	chr11:10373800-10375400	Weak transcription	Lung	lung
25	chr11:10373800-10377400	Enhancers	Adipose Nuclei	Adipose
26	chr11:10374000-10374600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:10374000-10374800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:10374000-10374800	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr11:10374000-10374800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:10374000-10375800	Weak transcription	Ovary	ovary
31	chr11:10374000-10376400	Weak transcription	NHEK	skin
32	chr11:10374000-10376600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:10374000-10377400	Weak transcription	NHDF-Ad	bronchial
34	chr11:10374200-10375400	Weak transcription	Psoas Muscle	Psoas
35	chr11:10374200-10375600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:10374200-10375800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:10374200-10375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:10374200-10376000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:10374200-10376000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:10374200-10376000	Weak transcription	Hela-S3	cervix
41	chr11:10374200-10376000	Weak transcription	NHLF	lung
42	chr11:10374200-10376200	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:10374200-10376200	Weak transcription	Right Atrium	heart
44	chr11:10374200-10376600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr11:10374200-10386400	Weak transcription	Small Intestine	intestine
46	chr11:10374400-10374600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr11:10374400-10374600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr11:10374400-10374800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr11:10374400-10374800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:10374400-10374800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links