Variant report

Variant	rs10841963
Chromosome Location	chr12:22310865-22310866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1024851	0.85[ASN][1000 genomes]
rs10770895	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10841952	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11046313	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs11046315	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11046324	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11046326	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11046327	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11609387	0.82[ASN][1000 genomes]
rs11833134	0.84[ASN][1000 genomes]
rs12372007	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2080552	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2216297	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4762729	0.81[ASN][1000 genomes]
rs4762730	0.83[ASN][1000 genomes]
rs4762732	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56116819	0.84[ASN][1000 genomes]
rs6487289	0.86[ASN][1000 genomes]
rs7301927	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7301993	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs759583	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7963066	0.84[ASN][1000 genomes]
rs7963799	0.86[ASN][1000 genomes]
rs7964713	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7969254	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7976974	0.86[ASN][1000 genomes]
rs8181690	0.87[ASN][1000 genomes]
rs918129	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs918130	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10841963	KCNJ8	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22307800-22313000	Weak transcription	Primary B cells from cord blood	blood
2	chr12:22308000-22313400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr12:22309800-22311200	Weak transcription	Primary T cells from cord blood	blood
4	chr12:22310200-22311400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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