Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1024851	0.84[ASN][1000 genomes]
rs10770895	0.91[ASN][1000 genomes]
rs10841952	0.83[ASN][1000 genomes]
rs10841963	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11046313	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs11046315	0.82[ASN][1000 genomes]
rs11046324	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11046326	0.92[ASN][1000 genomes]
rs11609387	0.81[ASN][1000 genomes]
rs11833134	0.83[ASN][1000 genomes]
rs12372007	0.81[ASN][1000 genomes]
rs2080552	0.82[ASN][1000 genomes]
rs2216297	0.82[ASN][1000 genomes]
rs4762729	0.81[ASN][1000 genomes]
rs4762730	0.82[ASN][1000 genomes]
rs4762732	0.84[ASN][1000 genomes]
rs56116819	0.84[ASN][1000 genomes]
rs6487289	0.85[ASN][1000 genomes]
rs7301927	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7301993	0.85[ASN][1000 genomes]
rs759583	0.91[ASN][1000 genomes]
rs7963066	0.83[ASN][1000 genomes]
rs7963799	0.85[ASN][1000 genomes]
rs7964713	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7969254	0.82[ASN][1000 genomes]
rs7976974	0.85[ASN][1000 genomes]
rs8181690	0.87[ASN][1000 genomes]
rs918129	0.94[ASN][1000 genomes]
rs918130	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758298	chr12:22140834-22339299	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759883	chr12:22140834-22736907	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:22315400-22318200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:22315800-22318200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr12:22316200-22318200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr12:22316200-22318200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:22316200-22318400	Enhancers	Primary B cells from peripheral blood	blood
6	chr12:22317400-22318200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr12:22317400-22318400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:22317600-22318200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:22317600-22318200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr12:22317600-22318800	Enhancers	Primary T cells from cord blood	blood
11	chr12:22317800-22318200	Enhancers	Primary B cells from cord blood	blood
12	chr12:22317800-22318200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr12:22317800-22318400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr12:22317800-22318600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr12:22317800-22318600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr12:22318000-22322200	Weak transcription	Fetal Thymus	thymus

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