Variant report
| Variant | rs11046313 |
|---|---|
| Chromosome Location | chr12:22274788-22274789 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ST8SIA1 | TF binding region |
| ENSG00000111728 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10841952 | 0.91[ASN][1000 genomes] |
| rs10841963 | 0.81[ASN][1000 genomes] |
| rs11046315 | 0.91[ASN][1000 genomes] |
| rs11046324 | 0.83[ASN][1000 genomes] |
| rs11046327 | 0.81[ASN][1000 genomes] |
| rs11609387 | 0.94[ASN][1000 genomes] |
| rs11833134 | 0.96[ASN][1000 genomes] |
| rs12372007 | 0.99[ASN][1000 genomes] |
| rs2080552 | 0.90[ASN][1000 genomes] |
| rs2216297 | 0.94[ASN][1000 genomes] |
| rs4762729 | 0.93[ASN][1000 genomes] |
| rs4762730 | 0.95[ASN][1000 genomes] |
| rs4762732 | 0.92[ASN][1000 genomes] |
| rs56116819 | 0.96[ASN][1000 genomes] |
| rs7301927 | 0.81[ASN][1000 genomes] |
| rs7964713 | 0.83[ASN][1000 genomes] |
| rs7969254 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758298 | chr12:22140834-22339299 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2759883 | chr12:22140834-22736907 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
