Variant report

Variant	rs10842692
Chromosome Location	chr12:26350936-26350937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10771265	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10842691	0.87[CHB][hapmap]
rs12313513	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1480029	0.84[ASN][1000 genomes]
rs1480030	0.91[ASN][1000 genomes]
rs2343869	0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7310101	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7310232	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26349200-26352000	Weak transcription	Spleen	Spleen
2	chr12:26349400-26351000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:26349400-26352000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:26349400-26352200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:26349600-26351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:26349600-26351400	Weak transcription	A549	lung
7	chr12:26349600-26351600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:26349600-26351600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:26349600-26351800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:26349600-26358000	Weak transcription	Fetal Intestine Small	intestine
11	chr12:26349800-26351200	Enhancers	Adipose Nuclei	Adipose
12	chr12:26349800-26351200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr12:26349800-26351200	Enhancers	Fetal Lung	lung
14	chr12:26349800-26351600	Weak transcription	Esophagus	oesophagus
15	chr12:26349800-26351800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:26349800-26351800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr12:26349800-26352400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr12:26349800-26352600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:26349800-26352600	Enhancers	Osteobl	bone
20	chr12:26349800-26356600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr12:26349800-26357400	Weak transcription	Ovary	ovary
22	chr12:26349800-26358000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr12:26350000-26351000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:26350000-26351400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:26350000-26351400	Enhancers	Brain Angular Gyrus	brain
26	chr12:26350000-26352400	Enhancers	HSMM	muscle
27	chr12:26350000-26352600	Enhancers	Brain Cingulate Gyrus	brain
28	chr12:26350000-26352600	Enhancers	NH-A	brain
29	chr12:26350000-26352800	Enhancers	Colon Smooth Muscle	Colon
30	chr12:26350000-26353600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:26350200-26352000	Enhancers	Fetal Muscle Leg	muscle
32	chr12:26350200-26352400	Enhancers	Brain Hippocampus Middle	brain
33	chr12:26350200-26352600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr12:26350200-26352600	Enhancers	Fetal Heart	heart
35	chr12:26350200-26353200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr12:26350600-26351000	Flanking Active TSS	HSMMtube	muscle
37	chr12:26350600-26352800	Enhancers	NHDF-Ad	bronchial
38	chr12:26350600-26357600	Weak transcription	NHLF	lung
39	chr12:26350800-26351000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
40	chr12:26350800-26351000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:26350800-26351000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr12:26350800-26351000	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr12:26350800-26351000	Flanking Active TSS	Brain Substantia Nigra	brain
44	chr12:26350800-26351000	Bivalent Enhancer	Fetal Thymus	thymus
45	chr12:26350800-26351000	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr12:26350800-26351000	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr12:26350800-26351200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr12:26350800-26351200	Enhancers	Pancreas	Pancrea
49	chr12:26350800-26351200	Enhancers	Psoas Muscle	Psoas
50	chr12:26350800-26351200	Flanking Active TSS	Rectal Smooth Muscle	rectum

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