Variant report

Variant	rs10842691
Chromosome Location	chr12:26346146-26346147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10771265	0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs10842686	0.84[ASN][1000 genomes]
rs10842688	0.88[ASN][1000 genomes]
rs10842689	0.89[ASN][1000 genomes]
rs10842692	0.87[CHB][hapmap]
rs11048425	0.89[ASN][1000 genomes]
rs1124417	0.84[ASN][1000 genomes]
rs1480029	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1552043	0.84[ASN][1000 genomes]
rs2343869	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6487536	0.89[ASN][1000 genomes]
rs7136036	0.84[ASN][1000 genomes]
rs7310101	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7310232	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7953744	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26338800-26348200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:26341800-26348000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:26341800-26348000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:26341800-26348000	Weak transcription	A549	lung
6	chr12:26341800-26348000	Weak transcription	NH-A	brain
7	chr12:26341800-26348000	Weak transcription	NHEK	skin
8	chr12:26341800-26348000	Weak transcription	Osteobl	bone
9	chr12:26343600-26348000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:26346000-26346600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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