Variant report

Variant	rs6487536
Chromosome Location	chr12:26337360-26337361
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505993	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10771264	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10771265	0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[ASN][1000 genomes]
rs1077585	0.87[ASN][1000 genomes]
rs10842683	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10842685	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10842686	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10842688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10842691	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10842692	0.82[CHB][hapmap]
rs11048425	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1124417	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1480029	0.81[ASN][1000 genomes]
rs1552043	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16930270	0.87[ASN][1000 genomes]
rs1842323	0.91[EUR][1000 genomes]
rs2343866	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2343867	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2343869	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs7133280	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7136036	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7300697	0.95[EUR][1000 genomes]
rs7300970	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7953744	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6487536	KRAS	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26330800-26337800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:26332400-26338200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:26336200-26338600	Weak transcription	Psoas Muscle	Psoas
4	chr12:26337200-26338400	Weak transcription	Placenta	Placenta

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