Variant report

Variant	rs10771265
Chromosome Location	chr12:26349311-26349312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10842688	0.81[ASN][1000 genomes]
rs10842689	0.82[ASN][1000 genomes]
rs10842691	0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs10842692	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs11048425	0.82[ASN][1000 genomes]
rs1480029	0.92[ASN][1000 genomes]
rs2343869	0.87[CHB][hapmap];0.86[CHD][hapmap];0.80[ASN][1000 genomes]
rs6487536	0.82[ASN][1000 genomes]
rs7310101	0.80[ASN][1000 genomes]
rs7310232	0.80[ASN][1000 genomes]
rs7953744	0.83[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10771265	FAR2	cis	cerebellum	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26347800-26349600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr12:26348000-26349400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr12:26348000-26349400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:26348000-26349400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr12:26348000-26349400	Active TSS	Brain Anterior Caudate	brain
6	chr12:26348000-26349400	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr12:26348000-26349400	Active TSS	Rectal Smooth Muscle	rectum
8	chr12:26348000-26349400	Active TSS	NHLF	lung
9	chr12:26348000-26349600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr12:26348000-26349600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:26348000-26349600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:26348000-26349600	Active TSS	Brain Cingulate Gyrus	brain
13	chr12:26348000-26349600	Active TSS	Colon Smooth Muscle	Colon
14	chr12:26348000-26349600	Active TSS	Fetal Kidney	kidney
15	chr12:26348000-26349600	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr12:26348000-26349600	Active TSS	Ovary	ovary
17	chr12:26348000-26349600	Active TSS	Stomach Smooth Muscle	stomach
18	chr12:26348000-26349600	Flanking Active TSS	NHEK	skin
19	chr12:26348000-26349800	Active TSS	Brain Substantia Nigra	brain
20	chr12:26348000-26349800	Active TSS	Left Ventricle	heart
21	chr12:26348000-26349800	Active TSS	Psoas Muscle	Psoas
22	chr12:26348000-26349800	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr12:26348000-26350000	Active TSS	Aorta	Aorta
24	chr12:26348000-26350000	Active TSS	Right Ventricle	heart
25	chr12:26348000-26350200	Active TSS	Fetal Muscle Leg	muscle
26	chr12:26348000-26350200	Active TSS	Right Atrium	heart
27	chr12:26348200-26349400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr12:26348200-26349400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:26348200-26349400	Flanking Active TSS	HMEC	breast
30	chr12:26348400-26349400	Active TSS	Brain Germinal Matrix	brain
31	chr12:26348400-26349400	Active TSS	A549	lung
32	chr12:26348600-26349400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr12:26348600-26349600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:26348800-26349400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
35	chr12:26348800-26349400	Flanking Active TSS	Primary B cells from peripheral blood	blood
36	chr12:26348800-26349400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
37	chr12:26348800-26349400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:26348800-26349400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:26348800-26349400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr12:26348800-26349400	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr12:26348800-26349400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr12:26348800-26349400	Active TSS	Fetal Heart	heart
43	chr12:26348800-26349400	Flanking Active TSS	Placenta	Placenta
44	chr12:26348800-26349600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr12:26348800-26349600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr12:26348800-26349600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr12:26348800-26349800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr12:26348800-26349800	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr12:26348800-26350000	Flanking Active TSS	HSMM	muscle
50	chr12:26348800-26350000	Flanking Active TSS	NH-A	brain

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