Variant report

Variant	rs10844108
Chromosome Location	chr12:32222646-32222647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr12:32221731-32222692	SK-N-SH	brain:	n/a	n/a
2	EP300	chr12:32221366-32222890	SK-N-SH	brain:	n/a	chr12:32221858-32221872

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32221817..32224949-chr12:32258403..32261337,3	MCF-7	breast:
2	chr12:32193881..32196557-chr12:32221966..32223576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257852	TF binding region
ENSG00000151746	Chromatin interaction
ENSG00000257530	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10771906	0.89[ASN][1000 genomes]
rs10771907	0.84[ASN][1000 genomes]
rs10771908	0.82[ASN][1000 genomes]
rs10771910	0.82[ASN][1000 genomes]
rs10771911	0.84[ASN][1000 genomes]
rs10771912	0.84[ASN][1000 genomes]
rs10771913	0.84[ASN][1000 genomes]
rs10844106	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10844107	0.89[ASN][1000 genomes]
rs10844109	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844111	0.89[ASN][1000 genomes]
rs10844112	0.89[ASN][1000 genomes]
rs10844113	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10844114	0.84[ASN][1000 genomes]
rs10844115	0.84[ASN][1000 genomes]
rs10844116	0.84[ASN][1000 genomes]
rs11051767	0.95[ASN][1000 genomes]
rs11051768	1.00[CEU][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11051769	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11051777	0.89[ASN][1000 genomes]
rs11051779	0.89[ASN][1000 genomes]
rs11051781	0.85[ASN][1000 genomes]
rs11051787	0.85[ASN][1000 genomes]
rs11051789	0.84[ASN][1000 genomes]
rs11051791	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11051828	1.00[ASW][hapmap]
rs11051829	1.00[ASW][hapmap]
rs11609854	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919225	0.88[ASN][1000 genomes]
rs2389068	0.85[ASN][1000 genomes]
rs3867163	0.85[ASN][1000 genomes]
rs4616125	0.85[ASN][1000 genomes]
rs6488030	0.89[ASN][1000 genomes]
rs7134602	0.84[ASN][1000 genomes]
rs7138326	0.84[ASN][1000 genomes]
rs7138578	0.84[ASN][1000 genomes]
rs7298142	0.85[ASN][1000 genomes]
rs7302076	0.85[ASN][1000 genomes]
rs7307717	0.95[ASN][1000 genomes]
rs7310661	0.84[ASN][1000 genomes]
rs7311149	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7311255	0.83[ASN][1000 genomes]
rs7953627	0.89[ASN][1000 genomes]
rs7964630	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32221200-32224000	Enhancers	Fetal Intestine Small	intestine
2	chr12:32221400-32223000	Enhancers	HUVEC	blood vessel
3	chr12:32221400-32224000	Enhancers	Fetal Intestine Large	intestine
4	chr12:32221600-32223400	Enhancers	Fetal Kidney	kidney
5	chr12:32221800-32222800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:32221800-32223400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr12:32222200-32223200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr12:32222400-32223600	Enhancers	Stomach Mucosa	stomach
9	chr12:32222400-32223600	Enhancers	A549	lung
10	chr12:32222600-32223000	Enhancers	Colonic Mucosa	Colon
11	chr12:32222600-32223600	Enhancers	HepG2	liver

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