Variant report

Variant	rs11051769
Chromosome Location	chr12:32221300-32221301
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10771906	0.90[ASN][1000 genomes]
rs10771907	0.83[ASN][1000 genomes]
rs10771908	0.81[ASN][1000 genomes]
rs10771910	0.81[ASN][1000 genomes]
rs10771911	0.83[ASN][1000 genomes]
rs10771912	0.83[ASN][1000 genomes]
rs10771913	0.83[ASN][1000 genomes]
rs10844106	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10844107	0.88[ASN][1000 genomes]
rs10844108	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844109	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844111	0.88[ASN][1000 genomes]
rs10844112	0.88[ASN][1000 genomes]
rs10844113	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10844114	0.83[ASN][1000 genomes]
rs10844115	0.83[ASN][1000 genomes]
rs10844116	0.83[ASN][1000 genomes]
rs11051767	0.96[ASN][1000 genomes]
rs11051768	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11051777	0.88[ASN][1000 genomes]
rs11051779	0.88[ASN][1000 genomes]
rs11051781	0.84[ASN][1000 genomes]
rs11051787	0.84[ASN][1000 genomes]
rs11051789	0.83[ASN][1000 genomes]
rs11051791	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11609854	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16919225	0.87[ASN][1000 genomes]
rs2389068	0.84[ASN][1000 genomes]
rs3867163	0.84[ASN][1000 genomes]
rs4616125	0.84[ASN][1000 genomes]
rs6488030	0.88[ASN][1000 genomes]
rs7134602	0.83[ASN][1000 genomes]
rs7138326	0.83[ASN][1000 genomes]
rs7138578	0.83[ASN][1000 genomes]
rs7298142	0.84[ASN][1000 genomes]
rs7302076	0.84[ASN][1000 genomes]
rs7307717	0.94[ASN][1000 genomes]
rs7310661	0.83[ASN][1000 genomes]
rs7311149	0.94[ASN][1000 genomes]
rs7311255	0.82[ASN][1000 genomes]
rs7953627	0.88[ASN][1000 genomes]
rs7964630	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32220800-32221800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:32221200-32221800	Enhancers	A549	lung
3	chr12:32221200-32222400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:32221200-32224000	Enhancers	Fetal Intestine Small	intestine

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