Variant report

Variant	rs11051767
Chromosome Location	chr12:32218152-32218153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10771906	0.86[ASN][1000 genomes]
rs10844106	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10844107	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10844108	0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs10844109	0.95[ASN][1000 genomes]
rs10844111	0.84[ASN][1000 genomes]
rs10844112	0.84[ASN][1000 genomes]
rs10844113	0.91[ASN][1000 genomes]
rs11051768	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11051769	0.96[ASN][1000 genomes]
rs11051777	0.84[ASN][1000 genomes]
rs11051779	0.84[ASN][1000 genomes]
rs11051781	0.80[ASN][1000 genomes]
rs11051787	0.80[ASN][1000 genomes]
rs11051791	0.87[ASN][1000 genomes]
rs11609854	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16919225	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2389068	0.80[ASN][1000 genomes]
rs3867163	0.80[ASN][1000 genomes]
rs4616125	0.80[ASN][1000 genomes]
rs6488030	0.84[ASN][1000 genomes]
rs7298142	0.80[ASN][1000 genomes]
rs7302076	0.80[ASN][1000 genomes]
rs7307717	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7311149	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7953627	0.84[ASN][1000 genomes]
rs7964630	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363806	chr12:31872264-32410283	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3508621	chr12:31872654-32410593	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3508622	chr12:31872654-32410593	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3410287	chr12:32142734-32219420	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv976030	chr12:32153446-32307541	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv983498	chr12:32153446-32388092	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11051767	PKP2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32213800-32221200	Weak transcription	A549	lung
2	chr12:32216000-32220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links