Variant report

Variant	rs10844279
Chromosome Location	chr12:32819180-32819181
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32810806..32813126-chr12:32818972..32820829,2	K562	blood:

Extended variants
information (count: 211 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs10082728	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10082887	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10083136	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1020670	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10437793	0.84[AFR][1000 genomes]
rs10771979	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10771980	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10771981	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10771982	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10771983	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10771984	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10771988	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10771989	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10844284	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844285	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844286	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844287	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844288	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844289	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844290	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844291	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844292	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844293	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844294	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844295	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844296	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844297	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844298	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844299	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844300	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844301	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844302	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844303	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844304	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844305	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844306	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844307	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844308	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844309	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844310	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844311	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844312	0.82[EUR][1000 genomes]
rs10844313	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10844314	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844315	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844316	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844317	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844318	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844319	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844320	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10844321	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844322	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844323	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10844324	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844326	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844328	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844329	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844330	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844331	0.81[EUR][1000 genomes]
rs10844332	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10844333	0.80[ASN][1000 genomes]
rs10844334	0.80[ASN][1000 genomes]
rs10844335	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10844336	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10844337	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10844338	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10844339	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10844340	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11052144	0.81[ASN][1000 genomes]
rs11052154	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052155	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052158	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052159	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052160	0.92[ASN][1000 genomes]
rs11052161	0.92[ASN][1000 genomes]
rs11052162	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052163	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11052164	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052166	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11052167	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052168	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052169	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052170	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052171	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052172	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052173	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052175	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052176	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052177	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052178	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052179	0.90[ASN][1000 genomes]
rs11052180	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052181	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052182	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052183	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052184	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052185	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052188	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052189	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052191	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052192	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052195	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052196	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052197	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052198	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052199	0.85[ASN][1000 genomes]
rs11052203	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11052205	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052206	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052210	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11052211	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11052213	0.80[ASN][1000 genomes]
rs11052214	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11052217	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11502796	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11502797	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11539444	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11539445	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11829276	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11829389	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11829963	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11830934	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11833496	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11833645	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11834855	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11837120	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12296459	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12298252	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12307480	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12307536	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12316165	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12317270	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319906	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12320877	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12322568	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12369487	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12371996	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13377898	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13377901	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13378050	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17541794	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1965538	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1971911	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2030747	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2124150	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2124151	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2272238	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2389082	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28464612	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34034589	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3827883	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4539413	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4641562	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56782904	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58298737	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58669264	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60657886	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61328017	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61369285	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61454222	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6488076	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488080	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66512341	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67052927	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67390499	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67580805	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68154285	0.81[EUR][1000 genomes]
rs7135097	0.85[ASN][1000 genomes]
rs7135691	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7297599	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7298030	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7300090	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7302970	0.83[ASN][1000 genomes]
rs7304930	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7305277	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7305407	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73082827	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73082829	0.90[ASN][1000 genomes]
rs73088891	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73099765	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7310136	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73295979	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74073091	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7952928	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7954206	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7954322	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7954612	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7955411	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7955582	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7957603	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7957841	0.80[ASN][1000 genomes]
rs7958074	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7969209	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7969353	0.80[ASN][1000 genomes]
rs7970914	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7971327	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7971495	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7971644	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7971719	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7971794	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7980752	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7980822	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9738373	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9738377	0.90[ASN][1000 genomes]
rs977542	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9971640	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971662	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971708	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9971873	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047658	chr12:32792554-32835646	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv541457	chr12:32792554-32835646	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32793600-32819600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:32813400-32825400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:32818800-32819200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:32818800-32819200	Active TSS	Osteobl	bone
5	chr12:32818800-32819800	Active TSS	Placenta	Placenta
6	chr12:32818800-32820000	Active TSS	Ovary	ovary
7	chr12:32819000-32819800	Active TSS	HSMMtube	muscle
8	chr12:32819000-32820000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:32819000-32820000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:32819000-32820000	Active TSS	Hela-S3	cervix
11	chr12:32819000-32820000	Active TSS	HepG2	liver

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