Variant report

Variant	rs9971873
Chromosome Location	chr12:32829576-32829577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:32829319-32829708	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:32828853..32831333-chr12:32832241..32833877,2	MCF-7	breast:

Variant related genes	Relation type
DNM1L	TF binding region
ENSG00000087470	Chromatin interaction

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10082728	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10082887	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10083136	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1020670	0.81[EUR][1000 genomes]
rs10771979	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10771980	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10771981	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10771982	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10771983	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10771984	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10771988	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10771989	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10844279	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10844284	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844285	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844286	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844287	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844288	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844289	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844290	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844291	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844292	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844293	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10844294	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844295	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844296	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844297	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844298	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844299	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844300	0.86[EUR][1000 genomes]
rs10844301	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844302	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844303	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844304	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844305	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844306	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844307	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844308	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844309	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844310	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844311	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844312	0.83[EUR][1000 genomes]
rs10844313	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10844314	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844315	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844316	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844317	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844318	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844319	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844320	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10844321	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10844322	0.84[EUR][1000 genomes]
rs10844323	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10844324	0.84[EUR][1000 genomes]
rs10844326	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10844328	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10844329	0.82[EUR][1000 genomes]
rs10844330	0.82[EUR][1000 genomes]
rs10844331	0.82[EUR][1000 genomes]
rs10844332	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10844335	0.81[EUR][1000 genomes]
rs10844336	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10844337	0.81[EUR][1000 genomes]
rs10844338	0.81[EUR][1000 genomes]
rs10844339	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10844340	0.81[EUR][1000 genomes]
rs11052154	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11052155	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11052158	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11052159	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11052160	0.87[ASN][1000 genomes]
rs11052161	0.87[ASN][1000 genomes]
rs11052162	0.85[EUR][1000 genomes]
rs11052163	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11052164	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11052166	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11052167	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052168	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052169	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052170	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052171	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052172	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052173	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052175	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052176	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052177	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11052178	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052179	0.85[ASN][1000 genomes]
rs11052180	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052181	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052182	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052183	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052184	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052185	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052188	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052189	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052191	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052192	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052195	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052196	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052197	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052198	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052199	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11052203	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11052205	0.82[EUR][1000 genomes]
rs11052206	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11052210	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11052211	0.81[EUR][1000 genomes]
rs11052214	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11052217	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11502796	0.86[EUR][1000 genomes]
rs11502797	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11539444	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11539445	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11829276	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11829389	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11829963	0.86[EUR][1000 genomes]
rs11830934	0.84[EUR][1000 genomes]
rs11833496	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11833645	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11834855	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11837120	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12296459	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12298252	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12307480	0.86[EUR][1000 genomes]
rs12307536	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12316165	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12317270	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12319906	0.84[EUR][1000 genomes]
rs12320877	0.82[EUR][1000 genomes]
rs12322568	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12369487	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12371996	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13377898	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13377901	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13378050	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17541794	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1965538	0.85[EUR][1000 genomes]
rs1971910	0.84[EUR][1000 genomes]
rs1971911	0.81[EUR][1000 genomes]
rs2030747	0.81[EUR][1000 genomes]
rs2124150	0.81[EUR][1000 genomes]
rs2124151	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2272238	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2389082	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28464612	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34034589	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3827883	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4539413	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4641562	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56782904	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58298737	0.86[EUR][1000 genomes]
rs58669264	0.82[EUR][1000 genomes]
rs60657886	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61328017	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61369285	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61454222	0.84[EUR][1000 genomes]
rs6488076	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6488080	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66512341	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67052927	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67390499	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67580805	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68154285	0.82[EUR][1000 genomes]
rs7135691	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7297599	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7298030	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7300090	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7302970	0.81[EUR][1000 genomes]
rs7304930	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7305277	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7305407	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73082827	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73082829	0.85[ASN][1000 genomes]
rs73088891	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73099765	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7310136	0.84[EUR][1000 genomes]
rs73295979	0.86[EUR][1000 genomes]
rs74073091	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7952928	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7954206	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7954322	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7954612	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7955411	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7955582	0.81[EUR][1000 genomes]
rs7957603	0.82[EUR][1000 genomes]
rs7958074	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7969209	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7969353	0.81[EUR][1000 genomes]
rs7970914	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7971327	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7971495	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7971644	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7971719	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7971794	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7980752	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7980822	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9738373	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9738377	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs977542	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9971640	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9971662	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9971708	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047658	chr12:32792554-32835646	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv541457	chr12:32792554-32835646	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32824800-32831800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr12:32825600-32831800	Weak transcription	Fetal Thymus	thymus
3	chr12:32825800-32831800	Weak transcription	Adipose Nuclei	Adipose
4	chr12:32826000-32831200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:32826000-32831800	Weak transcription	Brain Germinal Matrix	brain
6	chr12:32826000-32831800	Weak transcription	Fetal Muscle Leg	muscle
7	chr12:32827000-32831800	Enhancers	Placenta	Placenta
8	chr12:32827400-32831800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:32828000-32831800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:32828000-32832000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:32828200-32831800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr12:32828200-32831800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:32828400-32831800	Weak transcription	Primary B cells from cord blood	blood
14	chr12:32828400-32831800	Weak transcription	GM12878-XiMat	blood
15	chr12:32828400-32832000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr12:32828600-32829800	Enhancers	HepG2	liver
17	chr12:32828600-32831400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr12:32828600-32831800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr12:32828800-32830800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr12:32829000-32831800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links