Variant report

Variant	rs10845573
Chromosome Location	chr12:12675928-12675929
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr12:12675703-12676291	MCF-7	breast:	n/a	n/a
2	NR2F2	chr12:12675738-12676178	MCF-7	breast:	n/a	n/a
3	GATA3	chr12:12675714-12676244	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:12551031..12553032-chr12:12674320..12676066,2	MCF-7	breast:
2	chr12:12675003..12677370-chr12:12678643..12681429,2	K562	blood:
3	chr12:12672595..12674438-chr12:12675513..12677632,2	MCF-7	breast:
4	chr12:12672692..12674511-chr12:12674724..12676812,2	MCF-7	breast:

Variant related genes	Relation type
DUSP16	TF binding region
ENSG00000111266	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10845555	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10845558	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10845564	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10845570	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054927	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054929	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054930	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054931	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054938	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11054950	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11054960	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11054961	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11054965	0.90[AMR][1000 genomes]
rs12308450	0.90[AMR][1000 genomes]
rs12309339	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12309782	0.90[AMR][1000 genomes]
rs12309848	0.90[AMR][1000 genomes]
rs2970802	0.82[ASN][1000 genomes]
rs2970803	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4421828	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58968872	0.90[AMR][1000 genomes]
rs7138733	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7295113	0.90[AMR][1000 genomes]
rs7309871	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758295	chr12:12620654-12783124	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2759880	chr12:12620654-12783124	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv898811	chr12:12655443-12928295	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv523366	chr12:12665246-12679124	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv33583	chr12:12665776-12679108	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv523022	chr12:12673551-12688181	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12630800-12681000	Weak transcription	Colonic Mucosa	Colon
2	chr12:12634400-12685200	Weak transcription	Hela-S3	cervix
3	chr12:12639400-12679600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr12:12641600-12686200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:12659800-12678600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr12:12660000-12681800	Weak transcription	Fetal Kidney	kidney
7	chr12:12660400-12686200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:12660800-12676600	Weak transcription	Pancreas	Pancrea
9	chr12:12660800-12679800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:12664000-12690400	Weak transcription	NHLF	lung
11	chr12:12665000-12684400	Weak transcription	NHDF-Ad	bronchial
12	chr12:12665000-12685600	Weak transcription	HMEC	breast
13	chr12:12665000-12686200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:12665800-12678800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr12:12666800-12681200	Weak transcription	Colon Smooth Muscle	Colon
16	chr12:12667400-12686400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:12667600-12680800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr12:12668000-12680800	Weak transcription	Right Atrium	heart
19	chr12:12670000-12677400	Enhancers	Stomach Mucosa	stomach
20	chr12:12671200-12676200	Weak transcription	Gastric	stomach
21	chr12:12671200-12677000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr12:12671200-12681200	Weak transcription	HUVEC	blood vessel
23	chr12:12671400-12686200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:12671400-12686200	Weak transcription	Fetal Stomach	stomach
25	chr12:12671600-12678600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr12:12671600-12680800	Weak transcription	Lung	lung
27	chr12:12672000-12678000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr12:12672400-12680600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:12672600-12677800	Weak transcription	HSMMtube	muscle
30	chr12:12672800-12691200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:12673000-12676600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr12:12673000-12676600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr12:12673000-12676600	Weak transcription	Fetal Muscle Leg	muscle
34	chr12:12673000-12676600	Weak transcription	Right Ventricle	heart
35	chr12:12673000-12678400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr12:12673000-12678600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr12:12673000-12679600	Weak transcription	Fetal Lung	lung
38	chr12:12673000-12680600	Weak transcription	Osteobl	bone
39	chr12:12673000-12680800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr12:12673000-12680800	Weak transcription	Ovary	ovary
41	chr12:12673000-12681200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr12:12673000-12685200	Weak transcription	NHEK	skin
43	chr12:12673000-12690200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr12:12673200-12676200	Weak transcription	Fetal Heart	heart
45	chr12:12673200-12677000	Genic enhancers	HepG2	liver
46	chr12:12673200-12680800	Weak transcription	A549	lung
47	chr12:12673200-12682600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr12:12673800-12677200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr12:12674200-12676800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr12:12674200-12678800	Weak transcription	Primary T cells from cord blood	blood

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