Variant report

Variant	rs1084654
Chromosome Location	chr6:161182100-161182101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1084656	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1084658	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11060	0.83[EUR][1000 genomes]
rs11902	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1247551	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1247552	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1247553	0.83[EUR][1000 genomes]
rs1247555	0.85[EUR][1000 genomes]
rs1247556	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1247557	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1247558	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1406890	0.82[EUR][1000 genomes]
rs1406891	0.82[EUR][1000 genomes]
rs1614840	0.82[EUR][1000 genomes]
rs1620921	0.82[EUR][1000 genomes]
rs1621801	0.82[EUR][1000 genomes]
rs1652482	0.85[EUR][1000 genomes]
rs1652502	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1740442	0.82[EUR][1000 genomes]
rs1740443	0.83[EUR][1000 genomes]
rs783159	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs783162	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs783168	0.83[EUR][1000 genomes]
rs783169	0.84[EUR][1000 genomes]
rs783171	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs783173	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs783174	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs783177	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs783178	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1019113	chr6:161127584-161197558	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161171400-161187800	Weak transcription	Pancreas	Pancrea
2	chr6:161179000-161186000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:161181400-161187800	Weak transcription	Gastric	stomach
4	chr6:161181600-161187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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