Variant report

Variant	rs1652482
Chromosome Location	chr6:161197885-161197886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161196367..161198386-chr6:161199110..161200907,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1084654	0.85[EUR][1000 genomes]
rs1084656	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1084658	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11060	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11902	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247541	0.81[ASN][1000 genomes]
rs1247551	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247552	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247553	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1247554	0.81[ASN][1000 genomes]
rs1247555	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247556	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247557	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247558	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247561	0.90[ASN][1000 genomes]
rs1247562	0.90[ASN][1000 genomes]
rs1247563	0.90[ASN][1000 genomes]
rs1247568	0.90[ASN][1000 genomes]
rs1247570	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1406890	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1406891	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1614840	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1615527	0.87[EUR][1000 genomes]
rs1620921	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1621801	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652455	0.86[EUR][1000 genomes]
rs1652463	0.81[ASN][1000 genomes]
rs1652471	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1652499	0.81[ASN][1000 genomes]
rs1652500	0.81[ASN][1000 genomes]
rs1652502	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1740432	0.90[EUR][1000 genomes]
rs1740442	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1740443	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1740444	0.90[ASN][1000 genomes]
rs1740446	0.86[EUR][1000 genomes]
rs1830524	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1937486	0.83[ASN][1000 genomes]
rs1937487	0.83[ASN][1000 genomes]
rs2255792	0.83[ASN][1000 genomes]
rs2465857	0.83[ASN][1000 genomes]
rs2465859	0.83[ASN][1000 genomes]
rs2489938	0.83[ASN][1000 genomes]
rs2565724	1.00[CHB][hapmap]
rs2802356	0.91[ASN][1000 genomes]
rs28711930	0.81[ASN][1000 genomes]
rs2997094	0.83[ASN][1000 genomes]
rs62435345	0.83[ASN][1000 genomes]
rs6690	0.90[EUR][1000 genomes]
rs7450979	0.81[CEU][hapmap]
rs783156	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783159	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783160	0.81[ASN][1000 genomes]
rs783161	0.81[ASN][1000 genomes]
rs783162	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783163	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs783164	0.81[ASN][1000 genomes]
rs783168	0.96[EUR][1000 genomes]
rs783169	0.97[EUR][1000 genomes]
rs783171	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783173	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783174	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783175	0.91[ASN][1000 genomes]
rs783177	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783178	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783180	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783182	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9355844	0.81[ASN][1000 genomes]
rs9456598	0.81[ASN][1000 genomes]
rs9458048	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv981309	chr6:161193505-161211503	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161196400-161198000	Enhancers	Fetal Lung	lung
2	chr6:161197600-161198000	Enhancers	GM12878-XiMat	blood

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