Variant report

Variant	rs1740432
Chromosome Location	chr6:161210470-161210471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1084656	0.90[EUR][1000 genomes]
rs1084658	0.89[EUR][1000 genomes]
rs11060	0.87[EUR][1000 genomes]
rs11902	0.89[EUR][1000 genomes]
rs1247551	0.89[EUR][1000 genomes]
rs1247552	0.89[EUR][1000 genomes]
rs1247553	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1247555	0.90[EUR][1000 genomes]
rs1247556	0.89[EUR][1000 genomes]
rs1247557	0.90[EUR][1000 genomes]
rs1247558	0.90[EUR][1000 genomes]
rs1247561	0.82[ASN][1000 genomes]
rs1247562	0.82[ASN][1000 genomes]
rs1247563	0.82[ASN][1000 genomes]
rs1247568	0.82[ASN][1000 genomes]
rs1247570	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1406890	0.91[EUR][1000 genomes]
rs1406891	0.91[EUR][1000 genomes]
rs1614840	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1615527	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1620921	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1621801	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1652455	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1652482	0.90[EUR][1000 genomes]
rs1652502	0.90[EUR][1000 genomes]
rs1740442	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1740443	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1740444	0.82[ASN][1000 genomes]
rs1740446	0.83[EUR][1000 genomes]
rs6690	0.82[EUR][1000 genomes]
rs783156	0.87[EUR][1000 genomes]
rs783159	0.89[EUR][1000 genomes]
rs783162	0.89[EUR][1000 genomes]
rs783168	0.87[EUR][1000 genomes]
rs783169	0.87[EUR][1000 genomes]
rs783171	0.89[EUR][1000 genomes]
rs783173	0.89[EUR][1000 genomes]
rs783174	0.89[EUR][1000 genomes]
rs783177	0.84[EUR][1000 genomes]
rs783178	0.84[EUR][1000 genomes]
rs783180	0.82[EUR][1000 genomes]
rs783182	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv981309	chr6:161193505-161211503	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3444664	chr6:161209412-161212260	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161208000-161211200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:161208200-161211200	Weak transcription	K562	blood
3	chr6:161209000-161212400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:161209200-161211000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:161209200-161211200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:161209800-161211400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:161209800-161211800	ZNF genes & repeats	GM12878-XiMat	blood
8	chr6:161210000-161211200	Weak transcription	NHEK	skin
9	chr6:161210000-161212400	Weak transcription	HMEC	breast
10	chr6:161210200-161211000	Weak transcription	Esophagus	oesophagus
11	chr6:161210200-161211400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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