Variant report

Variant	rs6690
Chromosome Location	chr6:161174138-161174139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1084656	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1084658	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11060	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11902	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1247551	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1247552	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1247553	0.89[EUR][1000 genomes]
rs1247555	0.91[EUR][1000 genomes]
rs1247556	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1247557	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1247558	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1247570	0.86[EUR][1000 genomes]
rs1406890	0.88[EUR][1000 genomes]
rs1406891	0.88[EUR][1000 genomes]
rs1614840	0.88[EUR][1000 genomes]
rs1620921	0.88[EUR][1000 genomes]
rs1621801	0.88[EUR][1000 genomes]
rs1652482	0.90[EUR][1000 genomes]
rs1652502	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1740432	0.82[EUR][1000 genomes]
rs1740442	0.88[EUR][1000 genomes]
rs1740443	0.87[EUR][1000 genomes]
rs783159	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs783162	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs783168	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs783169	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs783171	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs783173	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs783174	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs783177	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs783178	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs783180	0.83[EUR][1000 genomes]
rs783182	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1019113	chr6:161127584-161197558	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv970189	chr6:161173027-161175090	Weak transcription Strong transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161140800-161175200	Strong transcription	Liver	Liver
2	chr6:161169600-161181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161170800-161174400	Weak transcription	Fetal Kidney	kidney
4	chr6:161171400-161187800	Weak transcription	Pancreas	Pancrea
5	chr6:161171800-161176400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:161171800-161176400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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