Variant report

Variant	rs783175
Chromosome Location	chr6:161171664-161171665
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161170784..161171753-chr6:161794646..161795782,4	MCF-7	breast:
2	chr6:161171347..161171874-chr6:161413503..161414501,3	K562	blood:
3	chr6:161171318..161172128-chr6:161791567..161792523,2	K562	blood:
4	chr6:161170865..161172640-chr6:161793998..161795799,2	MCF-7	breast:
5	chr6:161170261..161171981-chr6:161410808..161413803,2	K562	blood:
6	chr6:161170972..161171781-chr6:161412957..161413893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1084656	1.00[ASN][1000 genomes]
rs1084658	1.00[ASN][1000 genomes]
rs11060	1.00[ASN][1000 genomes]
rs11902	1.00[ASN][1000 genomes]
rs1247551	1.00[ASN][1000 genomes]
rs1247552	1.00[ASN][1000 genomes]
rs1247553	0.91[ASN][1000 genomes]
rs1247554	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247555	1.00[ASN][1000 genomes]
rs1247556	1.00[ASN][1000 genomes]
rs1247557	1.00[ASN][1000 genomes]
rs1247558	1.00[ASN][1000 genomes]
rs1247561	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1247562	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1247563	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1247568	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1247570	0.82[ASN][1000 genomes]
rs1406890	1.00[ASN][1000 genomes]
rs1406891	1.00[ASN][1000 genomes]
rs1614840	0.82[ASN][1000 genomes]
rs1620921	0.82[ASN][1000 genomes]
rs1621801	0.82[ASN][1000 genomes]
rs1652482	0.91[ASN][1000 genomes]
rs1652499	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1652500	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1652502	1.00[ASN][1000 genomes]
rs1740442	0.82[ASN][1000 genomes]
rs1740443	0.82[ASN][1000 genomes]
rs1740444	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1830524	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2802356	0.82[ASN][1000 genomes]
rs783156	0.82[ASN][1000 genomes]
rs783159	1.00[ASN][1000 genomes]
rs783160	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783161	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783162	1.00[ASN][1000 genomes]
rs783163	0.84[ASN][1000 genomes]
rs783164	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783167	0.87[EUR][1000 genomes]
rs783171	1.00[ASN][1000 genomes]
rs783173	1.00[ASN][1000 genomes]
rs783174	1.00[ASN][1000 genomes]
rs783177	1.00[ASN][1000 genomes]
rs783178	1.00[ASN][1000 genomes]
rs783180	1.00[ASN][1000 genomes]
rs783181	0.90[EUR][1000 genomes]
rs783182	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1019113	chr6:161127584-161197558	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3408644	chr6:161168362-161172960	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3422389	chr6:161169062-161172160	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161140800-161175200	Strong transcription	Liver	Liver
2	chr6:161169600-161181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161170800-161171800	Enhancers	GM12878-XiMat	blood
4	chr6:161170800-161174400	Weak transcription	Fetal Kidney	kidney
5	chr6:161171400-161171800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:161171400-161171800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:161171400-161171800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:161171400-161171800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:161171400-161171800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:161171400-161172000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:161171400-161187800	Weak transcription	Pancreas	Pancrea
12	chr6:161171600-161171800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:161171600-161171800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:161171600-161171800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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