Variant report

Variant	rs1652463
Chromosome Location	chr6:161237204-161237205
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161235361..161237238-chr6:161238681..161240959,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPA-2	chr6:161236582-161237293	XLOC_005906

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1247513	0.91[ASN][1000 genomes]
rs1247541	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1247553	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1247554	0.81[ASN][1000 genomes]
rs1247561	0.90[ASN][1000 genomes]
rs1247562	0.90[ASN][1000 genomes]
rs1247563	0.90[ASN][1000 genomes]
rs1247568	0.90[ASN][1000 genomes]
rs1247570	0.90[ASN][1000 genomes]
rs1406891	1.00[CHB][hapmap]
rs1614840	0.90[ASN][1000 genomes]
rs1620921	0.90[ASN][1000 genomes]
rs1621801	0.90[ASN][1000 genomes]
rs1652471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1652482	0.81[ASN][1000 genomes]
rs1652499	0.81[ASN][1000 genomes]
rs1652500	0.81[ASN][1000 genomes]
rs1740442	0.90[ASN][1000 genomes]
rs1740443	0.90[ASN][1000 genomes]
rs1740444	0.90[ASN][1000 genomes]
rs1830524	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1892347	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1892348	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1937485	0.91[ASN][1000 genomes]
rs1937486	0.83[ASN][1000 genomes]
rs1937487	0.83[ASN][1000 genomes]
rs2255792	0.83[ASN][1000 genomes]
rs2465850	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2465857	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2465859	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2489936	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2489938	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2565724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2802356	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28711930	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2953494	0.88[EUR][1000 genomes]
rs2953495	0.88[EUR][1000 genomes]
rs2997094	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2997095	0.90[EUR][1000 genomes]
rs62435345	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs783156	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs783160	0.81[ASN][1000 genomes]
rs783161	0.81[ASN][1000 genomes]
rs783164	0.81[ASN][1000 genomes]
rs9355842	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9355844	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456598	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458048	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv886815	chr6:161213047-161258658	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1837673	chr6:161216608-161318009	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886816	chr6:161225303-161286450	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv521351	chr6:161230801-161260530	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1832769	chr6:161231177-161246303	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv1827618	chr6:161231592-161246303	Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv966668	chr6:161233840-161257673	Active TSS Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv523929	chr6:161235098-161260530	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv605006	chr6:161235098-161271777	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv523015	chr6:161235710-161240841	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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