Variant report

Variant	rs10849820
Chromosome Location	chr12:121375558-121375559
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1027556	0.90[CEU][hapmap]
rs10431387	0.89[CEU][hapmap]
rs10437837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10437838	0.89[CEU][hapmap]
rs10774569	0.90[CEU][hapmap]
rs10774570	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10774571	0.90[CEU][hapmap]
rs10849785	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849788	0.89[CEU][hapmap]
rs10849789	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849792	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10849794	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10849795	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849810	0.90[CEU][hapmap]
rs10849811	0.90[CEU][hapmap]
rs10849814	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849821	1.00[ASN][1000 genomes]
rs11065242	0.82[JPT][hapmap]
rs11065262	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11065271	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs11065276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11065298	0.90[CEU][hapmap]
rs11065322	0.89[CEU][hapmap]
rs11065341	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11065344	0.98[ASN][1000 genomes]
rs11065355	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11833706	0.88[CEU][hapmap]
rs12302189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2229534	0.81[JPT][hapmap]
rs2393718	0.90[CEU][hapmap]
rs3213568	0.89[CEU][hapmap]
rs3213569	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3213571	0.90[CEU][hapmap]
rs3809314	0.89[CEU][hapmap]
rs6489780	0.89[CEU][hapmap]
rs7139145	0.90[CEU][hapmap]
rs715319	0.89[CEU][hapmap]
rs7298639	0.90[CEU][hapmap]
rs7965332	0.90[CEU][hapmap]
rs7977343	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv1838192	chr12:121363589-121402932	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121367400-121394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:121371200-121380200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:121372400-121375600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr12:121374000-121375600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr12:121374000-121379000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:121374200-121375800	Enhancers	Placenta	Placenta
7	chr12:121374800-121375600	Enhancers	Fetal Intestine Large	intestine
8	chr12:121374800-121375600	Enhancers	Fetal Intestine Small	intestine
9	chr12:121374800-121375800	Enhancers	HepG2	liver
10	chr12:121375000-121375800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr12:121375200-121377600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr12:121375400-121377600	Weak transcription	Adipose Nuclei	Adipose

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