Variant report

Variant	rs11065341
Chromosome Location	chr12:121369960-121369961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1027556	1.00[CEU][hapmap]
rs1039302	0.82[GIH][hapmap]
rs10431387	1.00[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap]
rs10437837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10437838	1.00[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap]
rs10774569	1.00[CEU][hapmap]
rs10774570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10774571	1.00[CEU][hapmap]
rs10849785	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10849788	1.00[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap]
rs10849789	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10849792	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs10849794	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10849795	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10849805	0.86[CEU][hapmap]
rs10849808	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10849810	1.00[CEU][hapmap]
rs10849811	1.00[CEU][hapmap]
rs10849814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs10849820	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10849821	0.97[ASN][1000 genomes]
rs11065240	0.82[JPT][hapmap]
rs11065242	0.82[JPT][hapmap]
rs11065262	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11065271	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs11065276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11065298	1.00[CEU][hapmap]
rs11065322	1.00[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap]
rs11065344	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11065355	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11833706	1.00[CEU][hapmap]
rs12302189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2229534	0.81[JPT][hapmap]
rs2393718	1.00[CEU][hapmap]
rs3213568	1.00[CEU][hapmap];0.89[GIH][hapmap]
rs3213569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3213571	1.00[CEU][hapmap]
rs3809314	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap]
rs6489780	1.00[CEU][hapmap];0.89[GIH][hapmap];0.92[MEX][hapmap]
rs7135147	0.82[GIH][hapmap]
rs7139145	1.00[CEU][hapmap]
rs715319	1.00[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap]
rs7298639	1.00[CEU][hapmap]
rs7965332	1.00[CEU][hapmap]
rs7977343	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv1838192	chr12:121363589-121402932	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121364400-121374000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:121367000-121370800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr12:121367000-121374800	Weak transcription	Fetal Intestine Small	intestine
4	chr12:121367400-121370800	Weak transcription	Colonic Mucosa	Colon
5	chr12:121367400-121370800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:121367400-121394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:121367600-121370000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:121367600-121371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:121367600-121371000	Weak transcription	Placenta	Placenta
10	chr12:121367600-121374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:121369600-121370200	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links