Variant report

Variant	rs10850757
Chromosome Location	chr12:117528982-117528983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117522745..117531514-chr12:117533680..117541602,11	K562	blood:
2	chr12:117517303..117519421-chr12:117527171..117531025,3	K562	blood:
3	chr12:117521637..117523408-chr12:117528244..117530881,2	MCF-7	breast:
4	chr12:117488907..117491503-chr12:117528799..117530966,2	K562	blood:

Variant related genes	Relation type
ENSG00000258285	Chromatin interaction
ENSG00000088992	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10850756	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11068314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11068322	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068323	1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12366868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12368978	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12371268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12425876	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12427193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59191649	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66832675	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67402554	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7958175	1.00[MEX][hapmap]
rs7959940	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117527400-117529000	ZNF genes & repeats	Dnd41	blood
5	chr12:117527400-117533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:117527800-117529000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr12:117528000-117529200	Enhancers	Fetal Kidney	kidney
8	chr12:117528200-117534600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr12:117528400-117529200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr12:117528400-117529600	Enhancers	Liver	Liver
11	chr12:117528400-117529800	Enhancers	Duodenum Mucosa	Duodenum
12	chr12:117528400-117531400	Enhancers	Stomach Mucosa	stomach
13	chr12:117528400-117534600	Enhancers	Pancreas	Pancrea
14	chr12:117528600-117529000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:117528600-117529000	Strong transcription	A549	lung
16	chr12:117528600-117529200	Enhancers	Fetal Intestine Large	intestine
17	chr12:117528600-117529400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:117528600-117529400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
19	chr12:117528600-117529600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr12:117528600-117529600	Enhancers	Fetal Intestine Small	intestine
21	chr12:117528600-117529800	Enhancers	Left Ventricle	heart
22	chr12:117528600-117530000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr12:117528600-117530000	Enhancers	K562	blood
24	chr12:117528600-117530200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:117528600-117530200	Enhancers	Right Ventricle	heart
26	chr12:117528800-117529000	Enhancers	HepG2	liver
27	chr12:117528800-117529200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:117528800-117529400	Enhancers	Fetal Heart	heart
29	chr12:117528800-117529400	Enhancers	Fetal Lung	lung
30	chr12:117528800-117529400	Weak transcription	Lung	lung
31	chr12:117528800-117529600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr12:117528800-117529600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr12:117528800-117529800	Weak transcription	Gastric	stomach
34	chr12:117528800-117536000	Weak transcription	Right Atrium	heart

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