Variant report

Variant	rs12368978
Chromosome Location	chr12:117530138-117530139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117522745..117531514-chr12:117533680..117541602,11	K562	blood:
2	chr12:117517303..117519421-chr12:117527171..117531025,3	K562	blood:
3	chr12:117521637..117523408-chr12:117528244..117530881,2	MCF-7	breast:
4	chr12:117488907..117491503-chr12:117528799..117530966,2	K562	blood:

Variant related genes	Relation type
ENSG00000258285	Chromatin interaction
ENSG00000088992	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10850756	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10850757	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11068314	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11068322	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11068323	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12366868	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12371268	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12425876	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12427193	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59191649	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66832675	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67402554	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7959940	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117527400-117533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:117528200-117534600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:117528400-117531400	Enhancers	Stomach Mucosa	stomach
7	chr12:117528400-117534600	Enhancers	Pancreas	Pancrea
8	chr12:117528600-117530200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:117528600-117530200	Enhancers	Right Ventricle	heart
10	chr12:117528800-117536000	Weak transcription	Right Atrium	heart
11	chr12:117529000-117530800	Weak transcription	Dnd41	blood
12	chr12:117529200-117534600	Weak transcription	Brain Anterior Caudate	brain
13	chr12:117529400-117531400	Weak transcription	Fetal Heart	heart
14	chr12:117529400-117532600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr12:117529400-117534800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:117529600-117530600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:117529600-117532400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr12:117529600-117536000	Weak transcription	Lung	lung
19	chr12:117529800-117530200	Weak transcription	Left Ventricle	heart
20	chr12:117529800-117532600	Enhancers	Gastric	stomach
21	chr12:117529800-117535000	Weak transcription	Spleen	Spleen
22	chr12:117530000-117530200	Transcr. at gene 5' and 3'	HepG2	liver
23	chr12:117530000-117531600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr12:117530000-117534400	Weak transcription	A549	lung
25	chr12:117530000-117535000	Weak transcription	K562	blood

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