Variant report

Variant	rs12366868
Chromosome Location	chr12:117527875-117527876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10850756	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10850757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11068322	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068323	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12368978	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12371268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12425876	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12427193	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59191649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66832675	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67402554	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7959940	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117515400-117528600	Weak transcription	K562	blood
3	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr12:117524000-117528400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:117525000-117528400	Enhancers	HepG2	liver
6	chr12:117525200-117528600	Weak transcription	Right Ventricle	heart
7	chr12:117525400-117528800	Weak transcription	Fetal Heart	heart
8	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:117526200-117528600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr12:117527000-117528400	Weak transcription	Gastric	stomach
11	chr12:117527200-117528400	Weak transcription	Stomach Mucosa	stomach
12	chr12:117527200-117528600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:117527200-117528600	Weak transcription	Left Ventricle	heart
14	chr12:117527400-117529000	ZNF genes & repeats	Dnd41	blood
15	chr12:117527400-117533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr12:117527600-117528200	Weak transcription	Brain Anterior Caudate	brain
17	chr12:117527600-117528600	ZNF genes & repeats	A549	lung
18	chr12:117527800-117529000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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