Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:118046298..118048327-chr12:118049389..118052295,2	MCF-7	breast:
2	chr12:118036749..118039602-chr12:118044303..118047236,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10850862	0.89[ASN][1000 genomes]
rs10850863	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10850864	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10850865	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10850868	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10850869	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10850870	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10850871	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11068590	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11068591	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11068592	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11068593	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12300780	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12369419	1.00[CHB][hapmap]
rs12424371	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7134816	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7305714	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7308764	0.83[AFR][1000 genomes]
rs7309018	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs869713	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118045800-118051200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:118045800-118051400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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