Variant report

Variant	rs12424371
Chromosome Location	chr12:118066956-118066957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10437852	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10437853	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10774941	0.81[EUR][1000 genomes]
rs10850852	0.81[EUR][1000 genomes]
rs10850853	0.81[EUR][1000 genomes]
rs10850857	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10850862	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10850863	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10850864	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10850865	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10850866	0.85[AFR][1000 genomes]
rs10850867	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10850868	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10850869	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10850870	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10850871	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10850872	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10850873	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11068590	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11068591	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11068592	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11068593	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12300780	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12320019	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12320140	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12424746	0.83[ASN][1000 genomes]
rs1568155	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1568156	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1878421	0.83[AFR][1000 genomes]
rs1878422	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1878423	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2393241	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2393242	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2393244	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2393245	0.89[ASN][1000 genomes]
rs2393246	0.89[ASN][1000 genomes]
rs2393247	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2393248	0.89[ASN][1000 genomes]
rs2393249	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3956806	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7134816	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7305714	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7308764	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7309018	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs869713	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118061000-118075000	Weak transcription	HUVEC	blood vessel
2	chr12:118065400-118072400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:118066200-118067200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr12:118066400-118067000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr12:118066400-118067200	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr12:118066600-118067000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr12:118066600-118067000	Active TSS	H9 Cell Line	embryonic stem cell
8	chr12:118066600-118067000	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr12:118066800-118067200	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links