Variant report
| Variant | rs10850862 |
|---|---|
| Chromosome Location | chr12:118070951-118070952 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10437852 | 0.89[ASN][1000 genomes] |
| rs10437853 | 0.89[ASN][1000 genomes] |
| rs10850857 | 0.89[ASN][1000 genomes] |
| rs10850863 | 0.94[ASN][1000 genomes] |
| rs10850864 | 0.94[ASN][1000 genomes] |
| rs10850865 | 0.94[ASN][1000 genomes] |
| rs10850867 | 0.89[ASN][1000 genomes] |
| rs10850868 | 0.94[ASN][1000 genomes] |
| rs10850869 | 0.94[ASN][1000 genomes] |
| rs10850870 | 0.94[ASN][1000 genomes] |
| rs10850871 | 0.94[ASN][1000 genomes] |
| rs10850872 | 0.89[ASN][1000 genomes] |
| rs10850873 | 0.89[ASN][1000 genomes] |
| rs11068590 | 0.94[ASN][1000 genomes] |
| rs11068591 | 0.94[ASN][1000 genomes] |
| rs11068592 | 0.94[ASN][1000 genomes] |
| rs11068593 | 0.94[ASN][1000 genomes] |
| rs12300780 | 0.94[ASN][1000 genomes] |
| rs12320019 | 0.89[ASN][1000 genomes] |
| rs12320140 | 0.89[ASN][1000 genomes] |
| rs12369419 | 1.00[CHB][hapmap] |
| rs12424371 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12424746 | 0.83[ASN][1000 genomes] |
| rs1568155 | 0.89[ASN][1000 genomes] |
| rs1568156 | 0.89[ASN][1000 genomes] |
| rs1878422 | 0.89[ASN][1000 genomes] |
| rs1878423 | 0.89[ASN][1000 genomes] |
| rs2393241 | 0.89[ASN][1000 genomes] |
| rs2393242 | 0.89[ASN][1000 genomes] |
| rs2393244 | 0.89[ASN][1000 genomes] |
| rs2393245 | 0.89[ASN][1000 genomes] |
| rs2393246 | 0.89[ASN][1000 genomes] |
| rs2393247 | 0.89[ASN][1000 genomes] |
| rs2393248 | 0.89[ASN][1000 genomes] |
| rs2393249 | 0.89[ASN][1000 genomes] |
| rs3956806 | 0.89[ASN][1000 genomes] |
| rs7134816 | 0.94[ASN][1000 genomes] |
| rs7305714 | 0.94[ASN][1000 genomes] |
| rs7308764 | 0.89[ASN][1000 genomes] |
| rs7309018 | 0.94[ASN][1000 genomes] |
| rs869713 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832527 | chr12:117974007-118110244 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10850862 | MED13L | cis | cerebellum | SCAN |
| rs10850862 | C12orf51 | cis | cerebellum | SCAN |
| rs10850862 | NOS1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:118061000-118075000 | Weak transcription | HUVEC | blood vessel |
| 2 | chr12:118065400-118072400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
