Variant report

Variant	rs10851507
Chromosome Location	chr15:52350669-52350670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52309859..52315433-chr15:52338782..52357079,28	MCF-7	breast:
2	chr15:52348651..52350159-chr15:52350189..52352122,2	K562	blood:
3	chr15:52310181..52316125-chr15:52344513..52354209,17	MCF-7	breast:
4	chr15:52348523..52350823-chr15:52362331..52364029,2	MCF-7	breast:
5	chr15:52348774..52350850-chr15:52362227..52365104,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259438	Chromatin interaction
ENSG00000069956	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10518674	0.97[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs10851506	0.82[EUR][1000 genomes]
rs11070875	0.82[EUR][1000 genomes]
rs11070877	0.86[CHB][hapmap];0.95[GIH][hapmap];0.85[MKK][hapmap]
rs11070878	0.82[ASN][1000 genomes]
rs11070879	0.95[JPT][hapmap]
rs11070880	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12439565	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2414127	0.82[CHB][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap]
rs2959283	0.90[GIH][hapmap];0.84[TSI][hapmap]
rs36046047	0.87[GIH][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap]
rs4627278	0.91[CHB][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs4775999	0.90[GIH][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap]
rs57550676	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7163418	0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs7166425	0.89[EUR][1000 genomes]
rs7177891	0.82[EUR][1000 genomes]
rs72732969	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72732970	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8034167	0.91[CHB][hapmap];0.92[GIH][hapmap]
rs8035945	0.80[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52314400-52359800	Weak transcription	Fetal Brain Male	brain
2	chr15:52332600-52350800	Weak transcription	Aorta	Aorta
3	chr15:52332600-52361800	Weak transcription	Gastric	stomach
4	chr15:52333000-52350800	Weak transcription	Right Ventricle	heart
5	chr15:52333000-52351000	Weak transcription	Spleen	Spleen
6	chr15:52334000-52361400	Weak transcription	Small Intestine	intestine
7	chr15:52334600-52357200	Weak transcription	Fetal Heart	heart
8	chr15:52335400-52350800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:52335400-52350800	Weak transcription	Pancreas	Pancrea
10	chr15:52337600-52360600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:52337800-52357000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:52338200-52351000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:52339200-52351000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:52339200-52351200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:52339200-52351600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:52339400-52359200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:52339600-52357000	Strong transcription	Fetal Intestine Large	intestine
18	chr15:52340200-52362200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:52341600-52357600	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:52341800-52358000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:52343000-52359400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:52343200-52352000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:52343200-52352000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:52344200-52356600	Strong transcription	Primary T cells from cord blood	blood
25	chr15:52344400-52357200	Strong transcription	Left Ventricle	heart
26	chr15:52344600-52350800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:52344600-52362000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr15:52345000-52350800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:52345000-52351000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:52345000-52357200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:52345000-52357800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:52345000-52358600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:52345200-52350800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr15:52345200-52358000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:52345600-52351000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:52345600-52351000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:52345600-52352600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:52345600-52358000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:52345600-52358800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:52345600-52358800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:52345800-52359200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:52346200-52359000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:52346400-52357200	Strong transcription	NHEK	skin
44	chr15:52346600-52350800	Weak transcription	Thymus	Thymus
45	chr15:52347000-52357600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:52347200-52353200	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr15:52347200-52356200	Strong transcription	Fetal Lung	lung
48	chr15:52347200-52356600	Strong transcription	Placenta	Placenta
49	chr15:52347200-52357000	Strong transcription	Fetal Thymus	thymus
50	chr15:52347200-52357200	Strong transcription	Fetal Muscle Trunk	muscle

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