Variant report

Variant	rs7163418
Chromosome Location	chr15:52294511-52294512
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52291508..52294628-chr15:52309882..52312955,3	MCF-7	breast:
2	chr15:52293187..52295152-chr15:52429263..52431004,2	K562	blood:
3	chr15:52293340..52296170-chr15:52297609..52300846,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259438	Chromatin interaction
ENSG00000259709	Chromatin interaction
ENSG00000069956	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10518674	0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs10851506	0.85[EUR][1000 genomes]
rs10851507	0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs11070875	0.85[EUR][1000 genomes]
rs11070877	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11636443	0.86[JPT][hapmap]
rs12439565	0.96[EUR][1000 genomes]
rs2414127	0.95[JPT][hapmap]
rs2414128	0.95[JPT][hapmap]
rs2959283	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4542605	0.90[ASN][1000 genomes]
rs4627278	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57550676	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7166425	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7177891	0.85[EUR][1000 genomes]
rs7179561	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs72732969	0.91[EUR][1000 genomes]
rs72732970	0.90[EUR][1000 genomes]
rs8034167	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs8035945	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053788	chr15:52223389-52307138	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1047260	chr15:52257100-52337418	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv1050664	chr15:52265723-52342101	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv517399	chr15:52266878-52305464	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1536	chr15:52276293-52320919	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52287600-52298000	Weak transcription	HSMMtube	muscle
2	chr15:52293000-52303200	Weak transcription	Pancreas	Pancrea
3	chr15:52293400-52303200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:52294400-52294800	Enhancers	Lung	lung
5	chr15:52294400-52295000	Enhancers	HUVEC	blood vessel

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