Variant report

Variant	rs36046047
Chromosome Location	chr15:52360346-52360347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52310579..52312836-chr15:52359488..52361744,2	K562	blood:
2	chr15:52360023..52361929-chr15:52364183..52367724,3	K562	blood:
3	chr15:52359845..52362361-chr15:52369816..52371937,2	MCF-7	breast:
4	chr15:52309819..52313849-chr15:52359399..52361958,4	MCF-7	breast:
5	chr15:52359987..52361803-chr15:52364183..52366513,2	K562	blood:
6	chr15:52347158..52349875-chr15:52357794..52360368,2	K562	blood:
7	chr15:52262485..52265375-chr15:52359294..52361353,2	MCF-7	breast:
8	chr15:52342647..52344200-chr15:52358974..52361107,2	MCF-7	breast:
9	chr15:52308069..52314807-chr15:52359242..52376066,34	MCF-7	breast:
10	chr15:52359410..52361152-chr15:52361561..52364348,3	MCF-7	breast:
11	chr15:52359015..52361742-chr15:52367466..52369559,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000069956	Chromatin interaction
ENSG00000259438	Chromatin interaction
ENSG00000166477	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10518674	1.00[CEU][hapmap];0.90[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs10851506	0.85[EUR][1000 genomes]
rs10851507	0.87[GIH][hapmap];0.87[JPT][hapmap];0.88[TSI][hapmap]
rs11070875	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11070877	0.82[GIH][hapmap]
rs11070879	0.81[JPT][hapmap]
rs11070880	0.84[EUR][1000 genomes]
rs2414127	0.88[GIH][hapmap];0.92[TSI][hapmap]
rs2959283	0.81[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes]
rs4627278	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap]
rs4775999	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7173725	0.81[TSI][hapmap]
rs7176761	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7177891	0.85[EUR][1000 genomes]
rs72732969	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530681	chr15:52297253-52390470	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv984198	chr15:52319726-52481137	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1039841	chr15:52357448-52381377	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52332600-52361800	Weak transcription	Gastric	stomach
2	chr15:52334000-52361400	Weak transcription	Small Intestine	intestine
3	chr15:52337600-52360600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:52340200-52362200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:52344600-52362000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:52348000-52361200	Weak transcription	Stomach Mucosa	stomach
7	chr15:52352200-52361400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:52352200-52363600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:52353000-52361800	Weak transcription	Pancreas	Pancrea
10	chr15:52353000-52362200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:52353200-52360400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:52353200-52370800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:52353600-52368800	Weak transcription	HSMMtube	muscle
14	chr15:52355600-52361600	Weak transcription	Fetal Intestine Small	intestine
15	chr15:52355600-52363400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:52356000-52363200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:52356200-52360400	Weak transcription	K562	blood
18	chr15:52356200-52361200	Weak transcription	Fetal Brain Female	brain
19	chr15:52356200-52361600	Weak transcription	A549	lung
20	chr15:52356200-52361800	Weak transcription	Esophagus	oesophagus
21	chr15:52356200-52363600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:52356200-52364000	Weak transcription	Fetal Lung	lung
23	chr15:52356200-52364400	Weak transcription	Lung	lung
24	chr15:52356200-52366000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr15:52356200-52368600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:52356200-52368800	Weak transcription	HUVEC	blood vessel
27	chr15:52356200-52369000	Weak transcription	Hela-S3	cervix
28	chr15:52356400-52360800	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:52356400-52368600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr15:52356600-52361400	Weak transcription	Primary T cells from cord blood	blood
31	chr15:52357000-52361400	Weak transcription	Fetal Thymus	thymus
32	chr15:52357000-52361600	Weak transcription	Fetal Intestine Large	intestine
33	chr15:52357000-52362000	Weak transcription	Brain Anterior Caudate	brain
34	chr15:52357200-52361400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr15:52357200-52371200	Weak transcription	Spleen	Spleen
36	chr15:52357400-52361600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:52357400-52363600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:52357600-52360600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:52357600-52360600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:52357600-52361600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr15:52357600-52361800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:52357600-52361800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:52357600-52362000	Weak transcription	Dnd41	blood
44	chr15:52357600-52363400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:52357600-52368600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:52357600-52368600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr15:52357600-52369000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr15:52357600-52373200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:52357800-52360600	Weak transcription	Adipose Nuclei	Adipose
50	chr15:52357800-52363400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links