Variant report

Variant	rs10857469
Chromosome Location	chr10:50532588-50532589
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10857466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11101093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101095	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101096	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11101099	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11101102	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11101107	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11101108	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12360386	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35647145	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848573	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61848574	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61848597	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50527400-50535800	Weak transcription	K562	blood
2	chr10:50528200-50534800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:50528800-50533200	Weak transcription	Psoas Muscle	Psoas
4	chr10:50529000-50532600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:50529000-50532800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:50529600-50533400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:50531400-50532600	Genic enhancers	Right Ventricle	heart
8	chr10:50531800-50533000	Strong transcription	Fetal Muscle Leg	muscle
9	chr10:50531800-50547800	Weak transcription	Pancreas	Pancrea
10	chr10:50532200-50532600	Weak transcription	Left Ventricle	heart
11	chr10:50532200-50533400	Strong transcription	Fetal Heart	heart
12	chr10:50532200-50534600	Strong transcription	Fetal Muscle Trunk	muscle
13	chr10:50532200-50537000	Weak transcription	Right Atrium	heart
14	chr10:50532400-50533800	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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