Variant report

Variant	rs61848597
Chromosome Location	chr10:50537588-50537589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10857466	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10857469	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10857470	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11101081	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11101093	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11101094	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11101095	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11101096	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11101099	0.99[EUR][1000 genomes]
rs11101102	0.97[EUR][1000 genomes]
rs11101107	0.97[EUR][1000 genomes]
rs11101108	0.97[EUR][1000 genomes]
rs12360386	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35647145	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61848573	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61848574	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50531800-50547800	Weak transcription	Pancreas	Pancrea
2	chr10:50533000-50540000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:50534800-50541000	Weak transcription	Right Ventricle	heart
4	chr10:50535800-50541000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:50536600-50537800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:50536800-50537600	Enhancers	Adipose Nuclei	Adipose
7	chr10:50536800-50538000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:50537400-50537600	Enhancers	Left Ventricle	heart
9	chr10:50537400-50537600	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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