Variant report

Variant	rs61848574
Chromosome Location	chr10:50509819-50509820
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZMIZ1	chr10:50509645-50509845	K562	blood:	n/a	n/a
2	MAX	chr10:50509306-50510001	K562	blood:	n/a	n/a
3	SMC3	chr10:50509779-50509926	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50451424..50453022-chr10:50507349..50510137,2	K562	blood:
2	chr10:50467089..50469467-chr10:50508943..50510857,2	K562	blood:
3	chr10:50462897..50464824-chr10:50509332..50512254,2	K562	blood:
4	chr10:50361956..50364273-chr10:50509060..50511829,2	K562	blood:
5	chr10:50477578..50479139-chr10:50508412..50510306,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10857466	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857469	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10857470	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11101081	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101093	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11101094	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11101095	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11101096	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11101099	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11101102	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11101107	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11101108	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12360386	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35647145	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848597	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50504800-50511200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:50507200-50511200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:50507200-50511400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:50507400-50513800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
5	chr10:50507600-50511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50507800-50511800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:50508200-50511200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:50508800-50510400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr10:50508800-50514400	Enhancers	Psoas Muscle	Psoas
10	chr10:50509200-50510400	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:50509200-50515400	Enhancers	Right Ventricle	heart
12	chr10:50509200-50517000	Weak transcription	Pancreas	Pancrea
13	chr10:50509400-50512000	Enhancers	Right Atrium	heart
14	chr10:50509400-50512800	Enhancers	Fetal Heart	heart
15	chr10:50509400-50515200	Enhancers	Left Ventricle	heart
16	chr10:50509600-50511000	Genic enhancers	K562	blood
17	chr10:50509600-50511400	Genic enhancers	Fetal Muscle Leg	muscle
18	chr10:50509800-50510000	Enhancers	Spleen	Spleen
19	chr10:50509800-50510200	Bivalent Enhancer	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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