Variant report

Variant	rs10858003
Chromosome Location	chr1:114089547-114089548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114089209..114091703-chr1:114094338..114096196,2	K562	blood:
2	chr1:114089317..114091954-chr1:114097454..114100252,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10858006	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12026423	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217202	0.83[ASN][1000 genomes]
rs1217212	0.81[ASN][1000 genomes]
rs1217224	0.81[ASN][1000 genomes]
rs1217229	0.83[ASN][1000 genomes]
rs1217238	0.88[ASN][1000 genomes]
rs1235000	0.83[ASN][1000 genomes]
rs1237290	0.83[ASN][1000 genomes]
rs1343630	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1743595	0.81[ASN][1000 genomes]
rs7518766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114072200-114095800	Weak transcription	Aorta	Aorta
2	chr1:114078000-114090000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:114082600-114100400	Weak transcription	Fetal Kidney	kidney
4	chr1:114083200-114099800	Weak transcription	Pancreas	Pancrea
5	chr1:114083400-114095200	Weak transcription	Liver	Liver
6	chr1:114083400-114100000	Weak transcription	Ovary	ovary
7	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:114084000-114092000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:114084600-114089800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:114084800-114095200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:114084800-114095600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:114085000-114092400	Weak transcription	Fetal Intestine Small	intestine
13	chr1:114085600-114093600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:114085600-114094000	Weak transcription	HMEC	breast
15	chr1:114085600-114094200	Weak transcription	NHDF-Ad	bronchial
16	chr1:114085600-114101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:114088200-114102000	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:114088600-114099600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:114088600-114101000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:114088600-114109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:114088800-114093800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:114088800-114094200	Weak transcription	NHEK	skin
23	chr1:114089200-114089600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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