The 2.0 version of rSNPBase

Variant report

Variant rs1217229
Chromosome Location chr1:114138568-114138569
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114100600-114140200 Weak transcription Left Ventricle heart
2 chr1:114100600-114173400 Weak transcription Gastric stomach
3 chr1:114110800-114139600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:114119000-114140400 Weak transcription Fetal Stomach stomach
5 chr1:114119200-114140400 Weak transcription Esophagus oesophagus
6 chr1:114119200-114145200 Weak transcription Lung lung
7 chr1:114119200-114172400 Weak transcription Pancreas Pancrea
8 chr1:114119200-114173000 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr1:114122800-114142600 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:114123000-114138800 Weak transcription Muscle Satellite Cultured Cells --
11 chr1:114123400-114139600 Weak transcription Fetal Heart heart
12 chr1:114124200-114140200 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:114124400-114172400 Weak transcription Aorta Aorta
14 chr1:114124800-114139600 Weak transcription Fetal Brain Male brain
15 chr1:114126600-114139400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr1:114126600-114139400 Weak transcription HSMM muscle
17 chr1:114126600-114157200 Weak transcription HUVEC blood vessel
18 chr1:114127000-114139600 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr1:114127400-114139400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:114128000-114139600 Weak transcription HepG2 liver
21 chr1:114128000-114140000 Weak transcription Ovary ovary
22 chr1:114129200-114138600 Weak transcription Primary T helper cells PMA-I stimulated --
23 chr1:114132400-114138800 Weak transcription Primary T cells from cord blood blood
24 chr1:114132600-114143200 Weak transcription NH-A brain
25 chr1:114133400-114141000 Weak transcription HMEC breast
26 chr1:114134200-114139400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:114134600-114166400 Weak transcription Hela-S3 cervix
28 chr1:114135400-114140600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr1:114135400-114141600 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:114135600-114139600 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr1:114135800-114141800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
32 chr1:114136200-114141200 Strong transcription Rectal Mucosa Donor 31 rectum
33 chr1:114136600-114138800 Strong transcription Fetal Lung lung
34 chr1:114136600-114139400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:114136600-114139400 Weak transcription Fetal Brain Female brain
36 chr1:114136600-114139600 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr1:114136600-114139600 Strong transcription Liver Liver
38 chr1:114136600-114140800 Strong transcription Rectal Mucosa Donor 29 rectum
39 chr1:114136800-114138800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:114136800-114139600 Strong transcription Duodenum Mucosa Duodenum
41 chr1:114136800-114140400 Strong transcription Placenta Placenta
42 chr1:114136800-114142000 Weak transcription Brain Angular Gyrus brain
43 chr1:114136800-114158800 Weak transcription Stomach Smooth Muscle stomach
44 chr1:114137000-114140200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:114137000-114141800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr1:114137000-114142000 Weak transcription HSMMtube muscle
47 chr1:114137000-114142400 Weak transcription Fetal Thymus thymus
48 chr1:114137000-114144000 Weak transcription Colon Smooth Muscle Colon
49 chr1:114137000-114145200 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr1:114137200-114138800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015