Variant report

Variant	rs10776773
Chromosome Location	chr1:114220738-114220739
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114220700..114221630-chr10:68416479..68417400,2	MCF-7	breast:
2	chr1:114031096..114032142-chr1:114220498..114221187,4	MCF-7	breast:
3	chr1:114220350..114221100-chr17:62398423..62399162,2	MCF-7	breast:
4	chr1:114212058..114214688-chr1:114217824..114221724,4	K562	blood:
5	chr1:114210224..114212923-chr1:114219476..114221721,2	MCF-7	breast:
6	chr1:114212026..114215527-chr1:114217715..114221049,6	K562	blood:
7	chr1:113682753..113683817-chr1:114220119..114221170,5	MCF-7	breast:
8	chr1:113682884..113683782-chr1:114220579..114221082,2	K562	blood:
9	chr1:113995191..113995964-chr1:114220394..114221133,3	MCF-7	breast:
10	chr1:113615370..113616292-chr1:114220668..114221212,2	K562	blood:
11	chr1:113932659..113933643-chr1:114220188..114220916,2	MCF-7	breast:
12	chr1:113681992..113683537-chr1:114220198..114221993,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198799	Chromatin interaction
ENSG00000238198	Chromatin interaction
ENSG00000081026	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10858006	0.80[ASN][1000 genomes]
rs10858015	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11102667	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102678	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1146183	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1146184	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1146185	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12138638	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1217194	0.84[ASN][1000 genomes]
rs1217202	0.80[ASN][1000 genomes]
rs1217212	0.82[ASN][1000 genomes]
rs1217224	0.82[ASN][1000 genomes]
rs1217229	0.80[ASN][1000 genomes]
rs1230673	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230684	0.81[EUR][1000 genomes]
rs1235000	0.80[ASN][1000 genomes]
rs1237290	0.80[ASN][1000 genomes]
rs12757859	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13524	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1624335	0.88[ASN][1000 genomes]
rs1743594	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1743595	0.82[ASN][1000 genomes]
rs1777239	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1935836	0.82[EUR][1000 genomes]
rs2636003	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2798137	0.88[ASN][1000 genomes]
rs3789597	0.83[ASN][1000 genomes]
rs7543121	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9429525	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114171600-114241400	Weak transcription	Right Ventricle	heart
2	chr1:114173000-114226800	Weak transcription	Aorta	Aorta
3	chr1:114173800-114236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:114179800-114239600	Weak transcription	Spleen	Spleen
5	chr1:114183000-114235800	Weak transcription	Dnd41	blood
6	chr1:114185200-114224400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:114185400-114228000	Weak transcription	HepG2	liver
8	chr1:114185800-114223600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:114194000-114223600	Weak transcription	Left Ventricle	heart
10	chr1:114196600-114226400	Weak transcription	Gastric	stomach
11	chr1:114200200-114227800	Weak transcription	Stomach Mucosa	stomach
12	chr1:114202000-114241400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:114203000-114232000	Weak transcription	Fetal Brain Female	brain
14	chr1:114203000-114237800	Weak transcription	NH-A	brain
15	chr1:114203200-114224800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:114203200-114232200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:114203200-114237600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:114203200-114298600	Weak transcription	Fetal Brain Male	brain
19	chr1:114203400-114237800	Weak transcription	Brain Angular Gyrus	brain
20	chr1:114206600-114223600	Weak transcription	Hela-S3	cervix
21	chr1:114206600-114226400	Weak transcription	NHLF	lung
22	chr1:114206600-114229800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:114207400-114230600	Weak transcription	NHEK	skin
24	chr1:114209600-114229600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:114209800-114232400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:114211200-114231400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr1:114211600-114234600	Weak transcription	Brain Germinal Matrix	brain
28	chr1:114213000-114221800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:114213400-114225400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:114213600-114232000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:114213600-114241600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:114214800-114232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:114215000-114226800	Weak transcription	Ovary	ovary
34	chr1:114215400-114235800	Weak transcription	Esophagus	oesophagus
35	chr1:114215400-114235800	Weak transcription	Lung	lung
36	chr1:114216000-114247000	Weak transcription	HMEC	breast
37	chr1:114216200-114225800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:114216200-114241600	Weak transcription	Pancreas	Pancrea
39	chr1:114216200-114279800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:114216400-114223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:114216400-114223600	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:114216400-114232000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:114216400-114250400	Weak transcription	Placenta	Placenta
44	chr1:114216600-114225600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:114216600-114225600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:114216600-114227600	Weak transcription	Fetal Thymus	thymus
47	chr1:114216800-114222800	Weak transcription	Fetal Intestine Small	intestine
48	chr1:114216800-114226400	Weak transcription	Primary T cells from cord blood	blood
49	chr1:114217200-114224800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:114217800-114221000	Enhancers	A549	lung

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