Variant report

Variant	rs1146184
Chromosome Location	chr1:114203101-114203102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114202310..114204666-chr1:114619854..114621847,2	K562	blood:
2	chr1:113635215..113637983-chr1:114201241..114204129,2	K562	blood:
3	chr1:114197750..114199827-chr1:114202286..114204073,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10776773	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10858006	0.86[ASN][1000 genomes]
rs10858015	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11102667	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11102678	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1146183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1146185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12026423	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12138638	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217194	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1217202	0.83[ASN][1000 genomes]
rs1217212	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1217224	0.85[ASN][1000 genomes]
rs1217229	0.83[ASN][1000 genomes]
rs1217238	0.81[ASN][1000 genomes]
rs1217375	0.85[CHB][hapmap]
rs1217403	0.85[CHB][hapmap]
rs1217408	0.85[CHB][hapmap]
rs1230673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1230675	0.83[ASN][1000 genomes]
rs1230681	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs1230684	0.88[EUR][1000 genomes]
rs1235000	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1237290	0.83[ASN][1000 genomes]
rs12757859	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1343630	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1624335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1743594	0.91[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1743595	0.88[ASN][1000 genomes]
rs1777239	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1935836	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1970559	0.82[CHB][hapmap]
rs2185827	0.82[CHB][hapmap]
rs2476599	0.81[CEU][hapmap]
rs2476602	0.85[CHB][hapmap]
rs2636003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2798137	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3789597	0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7522138	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs7543121	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9429525	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012324	chr1:114135133-114206843	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114171600-114241400	Weak transcription	Right Ventricle	heart
2	chr1:114173000-114214400	Weak transcription	Esophagus	oesophagus
3	chr1:114173000-114226800	Weak transcription	Aorta	Aorta
4	chr1:114173600-114206000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:114173800-114214400	Weak transcription	Pancreas	Pancrea
6	chr1:114173800-114236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:114179800-114239600	Weak transcription	Spleen	Spleen
8	chr1:114182000-114219600	Weak transcription	Fetal Kidney	kidney
9	chr1:114182600-114206200	Weak transcription	Hela-S3	cervix
10	chr1:114182800-114217400	Weak transcription	NHDF-Ad	bronchial
11	chr1:114183000-114235800	Weak transcription	Dnd41	blood
12	chr1:114183400-114215800	Weak transcription	Fetal Lung	lung
13	chr1:114183600-114216400	Weak transcription	A549	lung
14	chr1:114184600-114204800	Weak transcription	Psoas Muscle	Psoas
15	chr1:114185200-114224400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:114185400-114214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:114185400-114228000	Weak transcription	HepG2	liver
18	chr1:114185800-114223600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:114190000-114206200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:114190000-114217600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:114190000-114220000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:114190200-114204800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:114190200-114214000	Weak transcription	Placenta	Placenta
24	chr1:114194000-114223600	Weak transcription	Left Ventricle	heart
25	chr1:114194200-114215200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:114195600-114206000	Weak transcription	HSMM	muscle
27	chr1:114195600-114214400	Weak transcription	Adipose Nuclei	Adipose
28	chr1:114195800-114205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:114196400-114204800	Weak transcription	HMEC	breast
30	chr1:114196600-114226400	Weak transcription	Gastric	stomach
31	chr1:114196800-114214400	Weak transcription	Ovary	ovary
32	chr1:114197000-114214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:114197600-114214600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:114199600-114203200	Enhancers	Brain Cingulate Gyrus	brain
35	chr1:114199600-114203400	Enhancers	Brain Substantia Nigra	brain
36	chr1:114199800-114203200	Enhancers	Brain Anterior Caudate	brain
37	chr1:114199800-114203200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr1:114199800-114203200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr1:114200200-114227800	Weak transcription	Stomach Mucosa	stomach
40	chr1:114200400-114214400	Weak transcription	Fetal Muscle Leg	muscle
41	chr1:114200400-114215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr1:114201200-114203400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:114201200-114203400	Enhancers	Brain Angular Gyrus	brain
44	chr1:114201400-114203800	Strong transcription	Fetal Intestine Large	intestine
45	chr1:114201400-114204600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr1:114201600-114203400	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr1:114201600-114219400	Weak transcription	Fetal Heart	heart
48	chr1:114201800-114203200	Strong transcription	Primary T cells from cord blood	blood
49	chr1:114201800-114203200	Enhancers	Brain Germinal Matrix	brain
50	chr1:114201800-114203200	Strong transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links