Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10776773	0.80[ASN][1000 genomes]
rs10858003	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11102667	0.88[ASN][1000 genomes]
rs1146183	0.90[ASN][1000 genomes]
rs1146184	0.86[ASN][1000 genomes]
rs1146185	0.90[ASN][1000 genomes]
rs12026423	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12138638	0.84[ASN][1000 genomes]
rs1217194	0.88[ASN][1000 genomes]
rs1217202	0.96[ASN][1000 genomes]
rs1217212	0.94[ASN][1000 genomes]
rs1217224	0.94[ASN][1000 genomes]
rs1217229	0.96[ASN][1000 genomes]
rs1217238	0.94[ASN][1000 genomes]
rs1230673	0.88[ASN][1000 genomes]
rs1230675	0.84[ASN][1000 genomes]
rs1235000	0.96[ASN][1000 genomes]
rs1237290	0.96[ASN][1000 genomes]
rs12757859	0.84[ASN][1000 genomes]
rs1343630	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13524	0.86[ASN][1000 genomes]
rs1624335	0.92[ASN][1000 genomes]
rs1743594	0.88[ASN][1000 genomes]
rs1743595	0.90[ASN][1000 genomes]
rs1777239	0.94[ASN][1000 genomes]
rs2636003	0.88[ASN][1000 genomes]
rs2798137	0.92[ASN][1000 genomes]
rs7518766	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7543121	0.86[ASN][1000 genomes]
rs9429525	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
2	chr1:114100200-114127600	Weak transcription	Ovary	ovary
3	chr1:114100600-114118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:114100600-114118600	Weak transcription	Lung	lung
5	chr1:114100600-114118800	Weak transcription	Pancreas	Pancrea
6	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
7	chr1:114100600-114173400	Weak transcription	Gastric	stomach
8	chr1:114110800-114139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:114112800-114118600	Weak transcription	Esophagus	oesophagus
10	chr1:114113000-114118600	Weak transcription	Stomach Mucosa	stomach
11	chr1:114113000-114138400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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