Variant report

Variant	rs11102667
Chromosome Location	chr1:114216784-114216785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10776773	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10858006	0.88[ASN][1000 genomes]
rs10858015	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11102671	0.85[AFR][1000 genomes]
rs11102678	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1146183	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146184	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1146185	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12026423	0.80[ASN][1000 genomes]
rs12138638	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217194	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217202	0.88[ASN][1000 genomes]
rs1217212	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1217224	0.90[ASN][1000 genomes]
rs1217229	0.88[ASN][1000 genomes]
rs1217238	0.82[ASN][1000 genomes]
rs1230673	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230675	0.84[ASN][1000 genomes]
rs1230681	0.82[EUR][1000 genomes]
rs1230684	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1235000	0.88[ASN][1000 genomes]
rs1237290	0.88[ASN][1000 genomes]
rs12757859	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1343630	0.83[ASN][1000 genomes]
rs13524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1624335	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1743594	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1743595	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1777239	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935836	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2636003	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798137	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789597	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7518766	0.80[ASN][1000 genomes]
rs7543121	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9429525	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872161	chr1:114162194-114280135	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114171600-114241400	Weak transcription	Right Ventricle	heart
2	chr1:114173000-114226800	Weak transcription	Aorta	Aorta
3	chr1:114173800-114236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:114179800-114239600	Weak transcription	Spleen	Spleen
5	chr1:114182000-114219600	Weak transcription	Fetal Kidney	kidney
6	chr1:114182800-114217400	Weak transcription	NHDF-Ad	bronchial
7	chr1:114183000-114235800	Weak transcription	Dnd41	blood
8	chr1:114185200-114224400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:114185400-114228000	Weak transcription	HepG2	liver
10	chr1:114185800-114223600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:114190000-114217600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:114190000-114220000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:114194000-114223600	Weak transcription	Left Ventricle	heart
14	chr1:114196600-114226400	Weak transcription	Gastric	stomach
15	chr1:114200200-114227800	Weak transcription	Stomach Mucosa	stomach
16	chr1:114201600-114219400	Weak transcription	Fetal Heart	heart
17	chr1:114202000-114241400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:114202400-114220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:114203000-114232000	Weak transcription	Fetal Brain Female	brain
20	chr1:114203000-114237800	Weak transcription	NH-A	brain
21	chr1:114203200-114224800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr1:114203200-114232200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:114203200-114237600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:114203200-114298600	Weak transcription	Fetal Brain Male	brain
25	chr1:114203400-114217200	Weak transcription	Colonic Mucosa	Colon
26	chr1:114203400-114237800	Weak transcription	Brain Angular Gyrus	brain
27	chr1:114205000-114219800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:114206600-114223600	Weak transcription	Hela-S3	cervix
29	chr1:114206600-114226400	Weak transcription	NHLF	lung
30	chr1:114206600-114229800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:114206800-114217200	Weak transcription	Osteobl	bone
32	chr1:114207000-114220000	Weak transcription	HSMM	muscle
33	chr1:114207200-114218000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:114207200-114220000	Weak transcription	HSMMtube	muscle
35	chr1:114207400-114217000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:114207400-114230600	Weak transcription	NHEK	skin
37	chr1:114209600-114229600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:114209800-114232400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:114211200-114231400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:114211600-114234600	Weak transcription	Brain Germinal Matrix	brain
41	chr1:114211800-114216800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr1:114212000-114219800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:114213000-114221800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:114213400-114225400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:114213600-114218400	Strong transcription	Liver	Liver
46	chr1:114213600-114232000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:114213600-114241600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr1:114213800-114217800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr1:114214000-114216800	Strong transcription	Primary T cells from cord blood	blood
50	chr1:114214000-114218600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links