Variant report

Variant	rs10858028
Chromosome Location	chr1:114620725-114620726
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114202310..114204666-chr1:114619854..114621847,2	K562	blood:
2	chr1:114620515..114623507-chr1:114624325..114627250,3	K562	blood:
3	chr1:114619893..114621772-chr1:114628579..114631100,2	K562	blood:
4	chr1:114618845..114623942-chr1:114646339..114650725,5	K562	blood:
5	chr1:114585196..114589086-chr1:114619214..114622779,3	MCF-7	breast:
6	chr1:114615333..114617366-chr1:114618572..114622103,3	MCF-7	breast:
7	chr1:114619110..114621126-chr1:114623734..114625558,2	MCF-7	breast:
8	chr1:114616664..114618910-chr1:114620600..114622637,2	K562	blood:

No data

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11102721	0.85[EUR][1000 genomes]
rs11102722	0.85[EUR][1000 genomes]
rs11102727	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330700	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1394075	0.83[EUR][1000 genomes]
rs1587773	0.85[EUR][1000 genomes]
rs1604781	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1910486	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2774291	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2938317	0.86[EUR][1000 genomes]
rs2938321	0.85[EUR][1000 genomes]
rs2938324	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2938325	0.85[EUR][1000 genomes]
rs2938334	0.86[EUR][1000 genomes]
rs2938335	0.85[EUR][1000 genomes]
rs2938339	0.81[EUR][1000 genomes]
rs2938342	0.85[EUR][1000 genomes]
rs2938345	0.81[EUR][1000 genomes]
rs2938349	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2938350	0.85[EUR][1000 genomes]
rs2938351	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2938353	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3006991	0.80[EUR][1000 genomes]
rs3006994	0.82[EUR][1000 genomes]
rs3006995	0.83[EUR][1000 genomes]
rs3007004	0.86[EUR][1000 genomes]
rs3007005	0.85[EUR][1000 genomes]
rs3007007	0.86[EUR][1000 genomes]
rs3007010	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3007012	0.92[EUR][1000 genomes]
rs3007013	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4240537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs514647	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs529171	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs548040	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6537808	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9429734	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1849780	chr1:114577463-114663164	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv463284	chr1:114585590-114623867	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv547568	chr1:114585590-114623867	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv547569	chr1:114587766-114625425	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114618000-114623400	Weak transcription	Brain Substantia Nigra	brain
2	chr1:114618600-114621200	Enhancers	K562	blood
3	chr1:114618800-114623200	Weak transcription	Fetal Lung	lung
4	chr1:114619000-114620800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:114619000-114623200	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:114619200-114620800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:114619200-114621000	Weak transcription	GM12878-XiMat	blood
8	chr1:114619200-114623400	Weak transcription	Brain Anterior Caudate	brain
9	chr1:114619200-114640200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:114619400-114621200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:114619400-114621200	Weak transcription	Psoas Muscle	Psoas
12	chr1:114619400-114621400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:114619400-114623600	Weak transcription	Right Atrium	heart
14	chr1:114619600-114621200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:114619600-114621400	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:114619600-114621800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:114619600-114621800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:114619600-114622000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:114620200-114621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:114620200-114621600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:114620200-114621600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:114620200-114621800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:114620200-114621800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:114620200-114621800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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