Variant report

Variant	rs11102727
Chromosome Location	chr1:114625557-114625558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:114621614..114625641-chr1:114627637..114630642,5	MCF-7	breast:
2	chr1:114623758..114625854-chr1:114633416..114636156,2	MCF-7	breast:
3	chr1:114614196..114617663-chr1:114624428..114628635,5	MCF-7	breast:
4	chr1:114621187..114625954-chr1:114630932..114635442,7	MCF-7	breast:
5	chr1:114621189..114624161-chr1:114624603..114627561,2	MCF-7	breast:
6	chr1:114620515..114623507-chr1:114624325..114627250,3	K562	blood:
7	chr1:114623233..114626213-chr1:114628057..114630881,2	MCF-7	breast:
8	chr1:114619110..114621126-chr1:114623734..114625558,2	MCF-7	breast:
9	chr1:114590926..114593498-chr1:114625359..114627730,2	MCF-7	breast:
10	chr1:114623967..114627228-chr1:114653926..114657100,3	K562	blood:

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10858028	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330700	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2774291	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2938353	0.84[EUR][1000 genomes]
rs3007010	0.81[EUR][1000 genomes]
rs3007012	0.83[EUR][1000 genomes]
rs3007013	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4240537	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs514647	0.85[EUR][1000 genomes]
rs529171	0.85[EUR][1000 genomes]
rs548040	0.84[EUR][1000 genomes]
rs6537808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429734	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1849780	chr1:114577463-114663164	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114619200-114640200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:114621600-114625600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:114621800-114626200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:114621800-114626600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:114621800-114626600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:114621800-114626600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:114623200-114625600	Enhancers	Brain Hippocampus Middle	brain
8	chr1:114623200-114626000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:114623200-114626000	Enhancers	Fetal Lung	lung
10	chr1:114623400-114625600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:114623400-114625600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:114623400-114625600	Enhancers	Fetal Muscle Leg	muscle
13	chr1:114623400-114625600	Enhancers	Psoas Muscle	Psoas
14	chr1:114623600-114626000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr1:114623600-114626600	Enhancers	NHEK	skin
16	chr1:114623600-114629800	Weak transcription	Pancreas	Pancrea
17	chr1:114623800-114625600	Enhancers	Duodenum Mucosa	Duodenum
18	chr1:114623800-114626400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:114623800-114626400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr1:114624000-114625600	Enhancers	HSMMtube	muscle
21	chr1:114624400-114625600	Enhancers	HSMM	muscle
22	chr1:114624400-114626400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr1:114624400-114626600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:114624600-114626600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:114624600-114626600	Enhancers	HMEC	breast
26	chr1:114624800-114626000	Enhancers	Fetal Intestine Small	intestine
27	chr1:114624800-114626200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:114624800-114626400	Enhancers	Placenta	Placenta
29	chr1:114624800-114630800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:114625000-114631000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:114625200-114625800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr1:114625200-114626400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr1:114625400-114631200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:114625400-114631800	Weak transcription	Brain Germinal Matrix	brain
35	chr1:114625400-114639600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:114625400-114639800	Weak transcription	Right Atrium	heart

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